We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMEF2A
(GeneCards)
ModelMEF2A_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusddYTATTTWWRRh
Best auROC (human)0.946
Best auROC (mouse)0.973
Peak sets in benchmark (human)15
Peak sets in benchmark (mouse)6
Aligned words500
TF familyRegulators of differentiation {5.1.1}
TF subfamilyMEF-2 {5.1.1.1}
HGNCHGNC:6993
EntrezGeneGeneID:4205
(SSTAR profile)
UniProt IDMEF2A_HUMAN
UniProt ACQ02078
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.502409999999999
0.0005 6.47297
0.0001 8.339369999999999
GTEx tissue expression atlas MEF2A expression
ReMap ChIP-seq dataset list MEF2A datasets
Motifs in JASPAR
MA0052.1 (MEF2A; Homo sapiens)
MA0052.2 (MEF2A; Homo sapiens)
MA0052.3 (MEF2A; Homo sapiens)
PCM
ACGT
01137.039.0122.0202.0
0264.040.0194.0202.0
0314.0362.025.099.0
041.028.00.0471.0
05464.03.04.029.0
0632.01.04.0463.0
0751.01.02.0446.0
087.024.05.0464.0
0967.041.06.0386.0
1070.018.058.0354.0
11275.01.0218.06.0
1280.019.0329.072.0
13180.0192.052.076.0
PWM
ACGT
010.091-1.138-0.0240.475
02-0.658-1.1140.4350.475
03-2.0961.055-1.561-0.23
04-3.903-1.454-4.41.317
051.303-3.325-3.126-1.421
06-1.328-3.903-3.1261.3
07-0.879-3.903-3.5731.263
08-2.694-1.6-2.9611.303
09-0.613-1.09-2.8191.119
10-0.57-1.868-0.7541.033
110.782-3.9030.551-2.819
12-0.439-1.8180.96-0.543
130.3610.425-0.86-0.49