We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMef2a
ModelMEF2A_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusnddYTATTTWWRRhn
Best auROC (human)0.948
Best auROC (mouse)0.991
Peak sets in benchmark (human)15
Peak sets in benchmark (mouse)6
Aligned words487
TF familyRegulators of differentiation {5.1.1}
TF subfamilyMEF-2 {5.1.1.1}
MGIMGI:99532
EntrezGeneGeneID:17258
(SSTAR profile)
UniProt IDMEF2A_MOUSE
UniProt ACQ60929
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 10.732860000000002
0.0005 12.512060000000002
0.0001 16.18346
GTEx tissue expression atlas Mef2a expression
Motifs in JASPAR
MA0052.1 (MEF2A; Homo sapiens)
MA0052.2 (MEF2A; Homo sapiens)
MA0052.3 (MEF2A; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0143.02.048.036.025.05.06.040.031.013.032.044.039.07.028.088.0
0212.014.079.033.05.01.06.015.012.06.058.038.012.016.089.091.0
032.028.08.03.01.016.01.019.014.0139.019.060.04.0112.09.052.0
040.05.00.016.05.013.00.0277.00.02.00.035.01.015.00.0118.0
056.00.00.00.025.01.01.08.00.00.00.00.0413.02.07.024.0
0630.01.02.0411.01.00.00.02.00.00.01.07.01.00.00.031.0
079.00.01.022.00.00.00.01.00.01.00.02.038.05.03.0405.0
085.00.01.041.01.01.00.04.00.00.00.04.026.017.05.0382.0
096.03.01.022.01.02.01.014.01.01.00.04.089.058.08.0276.0
1011.03.04.079.06.04.00.054.01.01.03.05.035.014.029.0238.0
1129.01.021.02.020.01.00.01.07.01.026.02.0243.02.0127.04.0
1263.016.0187.033.02.00.01.02.016.015.0123.020.05.01.03.00.0
1340.031.04.011.07.011.00.014.0128.095.028.063.018.024.05.08.0
1468.033.047.045.045.046.09.061.011.09.06.011.022.018.014.042.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.342-2.5580.4510.166-0.194-1.744-1.5740.270.018-0.8340.0490.3650.245-1.429-0.0821.053
02-0.912-0.7620.9460.08-1.744-3.101-1.574-0.695-0.912-1.5740.6390.219-0.912-0.6321.0651.087
03-2.558-0.082-1.302-2.208-3.101-0.632-3.101-0.464-0.7621.509-0.4640.672-1.951.294-1.1890.53
04-4.378-1.744-4.378-0.632-1.744-0.834-4.3782.197-4.378-2.558-4.3780.138-3.101-0.695-4.3781.346
05-1.574-4.378-4.378-4.378-0.194-3.101-3.101-1.302-4.378-4.378-4.378-4.3782.596-2.558-1.429-0.234
06-0.014-3.101-2.5582.591-3.101-4.378-4.378-2.558-4.378-4.378-3.101-1.429-3.101-4.378-4.3780.018
07-1.189-4.378-3.101-0.32-4.378-4.378-4.378-3.101-4.378-3.101-4.378-2.5580.219-1.744-2.2082.577
08-1.744-4.378-3.1010.295-3.101-3.101-4.378-1.95-4.378-4.378-4.378-1.95-0.155-0.573-1.7442.518
09-1.574-2.208-3.101-0.32-3.101-2.558-3.101-0.762-3.101-3.101-4.378-1.951.0650.639-1.3022.193
10-0.996-2.208-1.950.946-1.574-1.95-4.3780.568-3.101-3.101-2.208-1.7440.138-0.762-0.0482.046
11-0.048-3.101-0.366-2.558-0.413-3.101-4.378-3.101-1.429-3.101-0.155-2.5582.066-2.5581.419-1.95
120.721-0.6321.8050.08-2.558-4.378-3.101-2.558-0.632-0.6951.387-0.413-1.744-3.101-2.208-4.378
130.270.018-1.95-0.996-1.429-0.996-4.378-0.7621.4271.13-0.0820.721-0.517-0.234-1.744-1.302
140.7970.080.430.3870.3870.409-1.1890.689-0.996-1.189-1.574-0.996-0.32-0.517-0.7620.319