Transcription factor | Mef2a | ||||||||
Model | MEF2A_MOUSE.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 15 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nddYTATTTWWRRhn | ||||||||
Best auROC (human) | 0.948 | ||||||||
Best auROC (mouse) | 0.991 | ||||||||
Peak sets in benchmark (human) | 15 | ||||||||
Peak sets in benchmark (mouse) | 6 | ||||||||
Aligned words | 487 | ||||||||
TF family | Regulators of differentiation {5.1.1} | ||||||||
TF subfamily | MEF-2 {5.1.1.1} | ||||||||
MGI | MGI:99532 | ||||||||
EntrezGene | GeneID:17258 (SSTAR profile) | ||||||||
UniProt ID | MEF2A_MOUSE | ||||||||
UniProt AC | Q60929 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Mef2a expression | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 43.0 | 2.0 | 48.0 | 36.0 | 25.0 | 5.0 | 6.0 | 40.0 | 31.0 | 13.0 | 32.0 | 44.0 | 39.0 | 7.0 | 28.0 | 88.0 |
02 | 12.0 | 14.0 | 79.0 | 33.0 | 5.0 | 1.0 | 6.0 | 15.0 | 12.0 | 6.0 | 58.0 | 38.0 | 12.0 | 16.0 | 89.0 | 91.0 |
03 | 2.0 | 28.0 | 8.0 | 3.0 | 1.0 | 16.0 | 1.0 | 19.0 | 14.0 | 139.0 | 19.0 | 60.0 | 4.0 | 112.0 | 9.0 | 52.0 |
04 | 0.0 | 5.0 | 0.0 | 16.0 | 5.0 | 13.0 | 0.0 | 277.0 | 0.0 | 2.0 | 0.0 | 35.0 | 1.0 | 15.0 | 0.0 | 118.0 |
05 | 6.0 | 0.0 | 0.0 | 0.0 | 25.0 | 1.0 | 1.0 | 8.0 | 0.0 | 0.0 | 0.0 | 0.0 | 413.0 | 2.0 | 7.0 | 24.0 |
06 | 30.0 | 1.0 | 2.0 | 411.0 | 1.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 | 1.0 | 7.0 | 1.0 | 0.0 | 0.0 | 31.0 |
07 | 9.0 | 0.0 | 1.0 | 22.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 1.0 | 0.0 | 2.0 | 38.0 | 5.0 | 3.0 | 405.0 |
08 | 5.0 | 0.0 | 1.0 | 41.0 | 1.0 | 1.0 | 0.0 | 4.0 | 0.0 | 0.0 | 0.0 | 4.0 | 26.0 | 17.0 | 5.0 | 382.0 |
09 | 6.0 | 3.0 | 1.0 | 22.0 | 1.0 | 2.0 | 1.0 | 14.0 | 1.0 | 1.0 | 0.0 | 4.0 | 89.0 | 58.0 | 8.0 | 276.0 |
10 | 11.0 | 3.0 | 4.0 | 79.0 | 6.0 | 4.0 | 0.0 | 54.0 | 1.0 | 1.0 | 3.0 | 5.0 | 35.0 | 14.0 | 29.0 | 238.0 |
11 | 29.0 | 1.0 | 21.0 | 2.0 | 20.0 | 1.0 | 0.0 | 1.0 | 7.0 | 1.0 | 26.0 | 2.0 | 243.0 | 2.0 | 127.0 | 4.0 |
12 | 63.0 | 16.0 | 187.0 | 33.0 | 2.0 | 0.0 | 1.0 | 2.0 | 16.0 | 15.0 | 123.0 | 20.0 | 5.0 | 1.0 | 3.0 | 0.0 |
13 | 40.0 | 31.0 | 4.0 | 11.0 | 7.0 | 11.0 | 0.0 | 14.0 | 128.0 | 95.0 | 28.0 | 63.0 | 18.0 | 24.0 | 5.0 | 8.0 |
14 | 68.0 | 33.0 | 47.0 | 45.0 | 45.0 | 46.0 | 9.0 | 61.0 | 11.0 | 9.0 | 6.0 | 11.0 | 22.0 | 18.0 | 14.0 | 42.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.342 | -2.558 | 0.451 | 0.166 | -0.194 | -1.744 | -1.574 | 0.27 | 0.018 | -0.834 | 0.049 | 0.365 | 0.245 | -1.429 | -0.082 | 1.053 |
02 | -0.912 | -0.762 | 0.946 | 0.08 | -1.744 | -3.101 | -1.574 | -0.695 | -0.912 | -1.574 | 0.639 | 0.219 | -0.912 | -0.632 | 1.065 | 1.087 |
03 | -2.558 | -0.082 | -1.302 | -2.208 | -3.101 | -0.632 | -3.101 | -0.464 | -0.762 | 1.509 | -0.464 | 0.672 | -1.95 | 1.294 | -1.189 | 0.53 |
04 | -4.378 | -1.744 | -4.378 | -0.632 | -1.744 | -0.834 | -4.378 | 2.197 | -4.378 | -2.558 | -4.378 | 0.138 | -3.101 | -0.695 | -4.378 | 1.346 |
05 | -1.574 | -4.378 | -4.378 | -4.378 | -0.194 | -3.101 | -3.101 | -1.302 | -4.378 | -4.378 | -4.378 | -4.378 | 2.596 | -2.558 | -1.429 | -0.234 |
06 | -0.014 | -3.101 | -2.558 | 2.591 | -3.101 | -4.378 | -4.378 | -2.558 | -4.378 | -4.378 | -3.101 | -1.429 | -3.101 | -4.378 | -4.378 | 0.018 |
07 | -1.189 | -4.378 | -3.101 | -0.32 | -4.378 | -4.378 | -4.378 | -3.101 | -4.378 | -3.101 | -4.378 | -2.558 | 0.219 | -1.744 | -2.208 | 2.577 |
08 | -1.744 | -4.378 | -3.101 | 0.295 | -3.101 | -3.101 | -4.378 | -1.95 | -4.378 | -4.378 | -4.378 | -1.95 | -0.155 | -0.573 | -1.744 | 2.518 |
09 | -1.574 | -2.208 | -3.101 | -0.32 | -3.101 | -2.558 | -3.101 | -0.762 | -3.101 | -3.101 | -4.378 | -1.95 | 1.065 | 0.639 | -1.302 | 2.193 |
10 | -0.996 | -2.208 | -1.95 | 0.946 | -1.574 | -1.95 | -4.378 | 0.568 | -3.101 | -3.101 | -2.208 | -1.744 | 0.138 | -0.762 | -0.048 | 2.046 |
11 | -0.048 | -3.101 | -0.366 | -2.558 | -0.413 | -3.101 | -4.378 | -3.101 | -1.429 | -3.101 | -0.155 | -2.558 | 2.066 | -2.558 | 1.419 | -1.95 |
12 | 0.721 | -0.632 | 1.805 | 0.08 | -2.558 | -4.378 | -3.101 | -2.558 | -0.632 | -0.695 | 1.387 | -0.413 | -1.744 | -3.101 | -2.208 | -4.378 |
13 | 0.27 | 0.018 | -1.95 | -0.996 | -1.429 | -0.996 | -4.378 | -0.762 | 1.427 | 1.13 | -0.082 | 0.721 | -0.517 | -0.234 | -1.744 | -1.302 |
14 | 0.797 | 0.08 | 0.43 | 0.387 | 0.387 | 0.409 | -1.189 | 0.689 | -0.996 | -1.189 | -1.574 | -0.996 | -0.32 | -0.517 | -0.762 | 0.319 |