We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMef2a
ModelMEF2A_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusddYTATTTWWRKhh
Best auROC (human)0.94
Best auROC (mouse)0.984
Peak sets in benchmark (human)15
Peak sets in benchmark (mouse)6
Aligned words498
TF familyRegulators of differentiation {5.1.1}
TF subfamilyMEF-2 {5.1.1.1}
MGIMGI:99532
EntrezGeneGeneID:17258
(SSTAR profile)
UniProt IDMEF2A_MOUSE
UniProt ACQ60929
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.5202100000000005
0.0005 6.359909999999999
0.0001 8.109770000000001
GTEx tissue expression atlas Mef2a expression
Motifs in JASPAR
MA0052.1 (MEF2A; Homo sapiens)
MA0052.2 (MEF2A; Homo sapiens)
MA0052.3 (MEF2A; Homo sapiens)
PCM
ACGT
01144.040.0112.0201.0
0261.041.0190.0205.0
0325.0339.027.0106.0
048.039.04.0446.0
05451.07.017.022.0
0638.010.06.0443.0
0728.08.07.0454.0
0828.028.010.0431.0
0987.062.013.0335.0
1074.014.042.0367.0
11305.06.0176.010.0
1268.025.0334.070.0
13159.0200.056.082.0
14179.0103.051.0164.0
PWM
ACGT
010.146-1.108-0.1020.476
02-0.699-1.0840.420.496
03-1.5560.996-1.483-0.157
04-2.578-1.132-3.1211.269
051.28-2.689-1.914-1.675
06-1.157-2.388-2.8131.262
07-1.449-2.578-2.6891.287
08-1.449-1.449-2.3881.235
09-0.351-0.683-2.1570.984
10-0.51-2.091-1.0611.075
110.891-2.8130.345-2.388
12-0.593-1.5560.981-0.564
130.2440.471-0.782-0.409
140.361-0.185-0.8730.275