Model info
| Transcription factor | Mef2a | ||||||||
| Model | MEF2A_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 14 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ddYTATTTWWRKhh | ||||||||
| Best auROC (human) | 0.94 | ||||||||
| Best auROC (mouse) | 0.984 | ||||||||
| Peak sets in benchmark (human) | 15 | ||||||||
| Peak sets in benchmark (mouse) | 6 | ||||||||
| Aligned words | 498 | ||||||||
| TF family | Regulators of differentiation {5.1.1} | ||||||||
| TF subfamily | MEF-2 {5.1.1.1} | ||||||||
| MGI | MGI:99532 | ||||||||
| EntrezGene | GeneID:17258 (SSTAR profile) | ||||||||
| UniProt ID | MEF2A_MOUSE | ||||||||
| UniProt AC | Q60929 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Mef2a expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 144.0 | 40.0 | 112.0 | 201.0 |
| 02 | 61.0 | 41.0 | 190.0 | 205.0 |
| 03 | 25.0 | 339.0 | 27.0 | 106.0 |
| 04 | 8.0 | 39.0 | 4.0 | 446.0 |
| 05 | 451.0 | 7.0 | 17.0 | 22.0 |
| 06 | 38.0 | 10.0 | 6.0 | 443.0 |
| 07 | 28.0 | 8.0 | 7.0 | 454.0 |
| 08 | 28.0 | 28.0 | 10.0 | 431.0 |
| 09 | 87.0 | 62.0 | 13.0 | 335.0 |
| 10 | 74.0 | 14.0 | 42.0 | 367.0 |
| 11 | 305.0 | 6.0 | 176.0 | 10.0 |
| 12 | 68.0 | 25.0 | 334.0 | 70.0 |
| 13 | 159.0 | 200.0 | 56.0 | 82.0 |
| 14 | 179.0 | 103.0 | 51.0 | 164.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.146 | -1.108 | -0.102 | 0.476 |
| 02 | -0.699 | -1.084 | 0.42 | 0.496 |
| 03 | -1.556 | 0.996 | -1.483 | -0.157 |
| 04 | -2.578 | -1.132 | -3.121 | 1.269 |
| 05 | 1.28 | -2.689 | -1.914 | -1.675 |
| 06 | -1.157 | -2.388 | -2.813 | 1.262 |
| 07 | -1.449 | -2.578 | -2.689 | 1.287 |
| 08 | -1.449 | -1.449 | -2.388 | 1.235 |
| 09 | -0.351 | -0.683 | -2.157 | 0.984 |
| 10 | -0.51 | -2.091 | -1.061 | 1.075 |
| 11 | 0.891 | -2.813 | 0.345 | -2.388 |
| 12 | -0.593 | -1.556 | 0.981 | -0.564 |
| 13 | 0.244 | 0.471 | -0.782 | -0.409 |
| 14 | 0.361 | -0.185 | -0.873 | 0.275 |