Transcription factor | MEF2C (GeneCards) | ||||||||
Model | MEF2C_HUMAN.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 15 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nddYTATTTWWRdhn | ||||||||
Best auROC (human) | 0.963 | ||||||||
Best auROC (mouse) | 0.886 | ||||||||
Peak sets in benchmark (human) | 6 | ||||||||
Peak sets in benchmark (mouse) | 9 | ||||||||
Aligned words | 496 | ||||||||
TF family | Regulators of differentiation {5.1.1} | ||||||||
TF subfamily | MEF-2 {5.1.1.1} | ||||||||
HGNC | HGNC:6996 | ||||||||
EntrezGene | GeneID:4208 (SSTAR profile) | ||||||||
UniProt ID | MEF2C_HUMAN | ||||||||
UniProt AC | Q06413 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | MEF2C expression | ||||||||
ReMap ChIP-seq dataset list | MEF2C datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 39.0 | 2.0 | 56.0 | 35.0 | 29.0 | 9.0 | 8.0 | 40.0 | 36.0 | 14.0 | 34.0 | 50.0 | 23.0 | 7.0 | 43.0 | 71.0 |
02 | 10.0 | 21.0 | 64.0 | 32.0 | 8.0 | 1.0 | 8.0 | 15.0 | 17.0 | 16.0 | 69.0 | 39.0 | 17.0 | 13.0 | 69.0 | 97.0 |
03 | 3.0 | 37.0 | 3.0 | 9.0 | 3.0 | 29.0 | 1.0 | 18.0 | 5.0 | 132.0 | 15.0 | 58.0 | 8.0 | 116.0 | 10.0 | 49.0 |
04 | 2.0 | 3.0 | 0.0 | 14.0 | 1.0 | 11.0 | 4.0 | 298.0 | 0.0 | 2.0 | 0.0 | 27.0 | 1.0 | 9.0 | 0.0 | 124.0 |
05 | 2.0 | 1.0 | 1.0 | 0.0 | 23.0 | 1.0 | 0.0 | 1.0 | 2.0 | 2.0 | 0.0 | 0.0 | 433.0 | 4.0 | 18.0 | 8.0 |
06 | 22.0 | 5.0 | 3.0 | 430.0 | 2.0 | 2.0 | 1.0 | 3.0 | 1.0 | 0.0 | 2.0 | 16.0 | 0.0 | 0.0 | 0.0 | 9.0 |
07 | 5.0 | 1.0 | 0.0 | 19.0 | 0.0 | 1.0 | 0.0 | 6.0 | 1.0 | 1.0 | 0.0 | 4.0 | 42.0 | 4.0 | 2.0 | 410.0 |
08 | 1.0 | 2.0 | 2.0 | 43.0 | 0.0 | 2.0 | 0.0 | 5.0 | 0.0 | 1.0 | 0.0 | 1.0 | 26.0 | 24.0 | 4.0 | 385.0 |
09 | 7.0 | 1.0 | 0.0 | 19.0 | 3.0 | 4.0 | 2.0 | 20.0 | 1.0 | 2.0 | 2.0 | 1.0 | 79.0 | 37.0 | 4.0 | 314.0 |
10 | 8.0 | 7.0 | 5.0 | 70.0 | 4.0 | 6.0 | 3.0 | 31.0 | 1.0 | 3.0 | 1.0 | 3.0 | 40.0 | 23.0 | 42.0 | 249.0 |
11 | 21.0 | 1.0 | 29.0 | 2.0 | 30.0 | 0.0 | 9.0 | 0.0 | 21.0 | 0.0 | 29.0 | 1.0 | 224.0 | 6.0 | 118.0 | 5.0 |
12 | 80.0 | 15.0 | 166.0 | 35.0 | 2.0 | 1.0 | 2.0 | 2.0 | 18.0 | 19.0 | 115.0 | 33.0 | 3.0 | 0.0 | 3.0 | 2.0 |
13 | 50.0 | 35.0 | 5.0 | 13.0 | 10.0 | 13.0 | 0.0 | 12.0 | 117.0 | 100.0 | 30.0 | 39.0 | 20.0 | 35.0 | 10.0 | 7.0 |
14 | 83.0 | 40.0 | 42.0 | 32.0 | 53.0 | 55.0 | 15.0 | 60.0 | 15.0 | 11.0 | 7.0 | 12.0 | 15.0 | 14.0 | 10.0 | 32.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 0.227 | -2.576 | 0.586 | 0.12 | -0.066 | -1.207 | -1.32 | 0.252 | 0.148 | -0.78 | 0.091 | 0.473 | -0.294 | -1.447 | 0.324 | 0.822 |
02 | -1.106 | -0.384 | 0.719 | 0.031 | -1.32 | -3.119 | -1.32 | -0.713 | -0.591 | -0.65 | 0.793 | 0.227 | -0.591 | -0.852 | 0.793 | 1.132 |
03 | -2.226 | 0.175 | -2.226 | -1.207 | -2.226 | -0.066 | -3.119 | -0.535 | -1.762 | 1.439 | -0.713 | 0.621 | -1.32 | 1.311 | -1.106 | 0.453 |
04 | -2.576 | -2.226 | -4.393 | -0.78 | -3.119 | -1.014 | -1.968 | 2.252 | -4.393 | -2.576 | -4.393 | -0.136 | -3.119 | -1.207 | -4.393 | 1.377 |
05 | -2.576 | -3.119 | -3.119 | -4.393 | -0.294 | -3.119 | -4.393 | -3.119 | -2.576 | -2.576 | -4.393 | -4.393 | 2.625 | -1.968 | -0.535 | -1.32 |
06 | -0.338 | -1.762 | -2.226 | 2.618 | -2.576 | -2.576 | -3.119 | -2.226 | -3.119 | -4.393 | -2.576 | -0.65 | -4.393 | -4.393 | -4.393 | -1.207 |
07 | -1.762 | -3.119 | -4.393 | -0.482 | -4.393 | -3.119 | -4.393 | -1.592 | -3.119 | -3.119 | -4.393 | -1.968 | 0.3 | -1.968 | -2.576 | 2.571 |
08 | -3.119 | -2.576 | -2.576 | 0.324 | -4.393 | -2.576 | -4.393 | -1.762 | -4.393 | -3.119 | -4.393 | -3.119 | -0.174 | -0.252 | -1.968 | 2.508 |
09 | -1.447 | -3.119 | -4.393 | -0.482 | -2.226 | -1.968 | -2.576 | -0.431 | -3.119 | -2.576 | -2.576 | -3.119 | 0.928 | 0.175 | -1.968 | 2.304 |
10 | -1.32 | -1.447 | -1.762 | 0.808 | -1.968 | -1.592 | -2.226 | 0.0 | -3.119 | -2.226 | -3.119 | -2.226 | 0.252 | -0.294 | 0.3 | 2.073 |
11 | -0.384 | -3.119 | -0.066 | -2.576 | -0.032 | -4.393 | -1.207 | -4.393 | -0.384 | -4.393 | -0.066 | -3.119 | 1.967 | -1.592 | 1.328 | -1.762 |
12 | 0.94 | -0.713 | 1.668 | 0.12 | -2.576 | -3.119 | -2.576 | -2.576 | -0.535 | -0.482 | 1.302 | 0.062 | -2.226 | -4.393 | -2.226 | -2.576 |
13 | 0.473 | 0.12 | -1.762 | -0.852 | -1.106 | -0.852 | -4.393 | -0.93 | 1.319 | 1.163 | -0.032 | 0.227 | -0.431 | 0.12 | -1.106 | -1.447 |
14 | 0.977 | 0.252 | 0.3 | 0.031 | 0.531 | 0.568 | -0.713 | 0.654 | -0.713 | -1.014 | -1.447 | -0.93 | -0.713 | -0.78 | -1.106 | 0.031 |