We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMEF2C
(GeneCards)
ModelMEF2C_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusddYTATTTWWRRh
Best auROC (human)0.959
Best auROC (mouse)0.877
Peak sets in benchmark (human)6
Peak sets in benchmark (mouse)9
Aligned words500
TF familyRegulators of differentiation {5.1.1}
TF subfamilyMEF-2 {5.1.1.1}
HGNCHGNC:6996
EntrezGeneGeneID:4208
(SSTAR profile)
UniProt IDMEF2C_HUMAN
UniProt ACQ06413
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.49306
0.0005 6.42221
0.0001 8.2904
GTEx tissue expression atlas MEF2C expression
ReMap ChIP-seq dataset list MEF2C datasets
Motifs in JASPAR
PCM
ACGT
01149.037.0142.0172.0
0252.046.0210.0192.0
0315.0346.023.0116.0
041.031.00.0468.0
05474.08.03.015.0
0630.03.01.0466.0
0740.06.03.0451.0
0812.019.05.0464.0
0974.045.011.0370.0
1069.021.061.0349.0
11283.02.0211.04.0
1277.036.0317.070.0
13180.0182.051.087.0
PWM
ACGT
010.174-1.1890.1260.316
02-0.86-0.9790.5140.425
03-2.0341.01-1.64-0.074
04-3.903-1.358-4.41.311
051.324-2.584-3.325-2.034
06-1.389-3.325-3.9031.307
07-1.114-2.819-3.3251.274
08-2.234-1.818-2.9611.303
09-0.516-1.0-2.3111.077
10-0.584-1.725-0.7051.019
110.81-3.5730.519-3.126
12-0.477-1.2150.923-0.57
130.3610.372-0.879-0.357