Model info
| Transcription factor | MEF2C (GeneCards) | ||||||||
| Model | MEF2C_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | ddYTATTTWWRRh | ||||||||
| Best auROC (human) | 0.959 | ||||||||
| Best auROC (mouse) | 0.877 | ||||||||
| Peak sets in benchmark (human) | 6 | ||||||||
| Peak sets in benchmark (mouse) | 9 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Regulators of differentiation {5.1.1} | ||||||||
| TF subfamily | MEF-2 {5.1.1.1} | ||||||||
| HGNC | HGNC:6996 | ||||||||
| EntrezGene | GeneID:4208 (SSTAR profile) | ||||||||
| UniProt ID | MEF2C_HUMAN | ||||||||
| UniProt AC | Q06413 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | MEF2C expression | ||||||||
| ReMap ChIP-seq dataset list | MEF2C datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 149.0 | 37.0 | 142.0 | 172.0 |
| 02 | 52.0 | 46.0 | 210.0 | 192.0 |
| 03 | 15.0 | 346.0 | 23.0 | 116.0 |
| 04 | 1.0 | 31.0 | 0.0 | 468.0 |
| 05 | 474.0 | 8.0 | 3.0 | 15.0 |
| 06 | 30.0 | 3.0 | 1.0 | 466.0 |
| 07 | 40.0 | 6.0 | 3.0 | 451.0 |
| 08 | 12.0 | 19.0 | 5.0 | 464.0 |
| 09 | 74.0 | 45.0 | 11.0 | 370.0 |
| 10 | 69.0 | 21.0 | 61.0 | 349.0 |
| 11 | 283.0 | 2.0 | 211.0 | 4.0 |
| 12 | 77.0 | 36.0 | 317.0 | 70.0 |
| 13 | 180.0 | 182.0 | 51.0 | 87.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.174 | -1.189 | 0.126 | 0.316 |
| 02 | -0.86 | -0.979 | 0.514 | 0.425 |
| 03 | -2.034 | 1.01 | -1.64 | -0.074 |
| 04 | -3.903 | -1.358 | -4.4 | 1.311 |
| 05 | 1.324 | -2.584 | -3.325 | -2.034 |
| 06 | -1.389 | -3.325 | -3.903 | 1.307 |
| 07 | -1.114 | -2.819 | -3.325 | 1.274 |
| 08 | -2.234 | -1.818 | -2.961 | 1.303 |
| 09 | -0.516 | -1.0 | -2.311 | 1.077 |
| 10 | -0.584 | -1.725 | -0.705 | 1.019 |
| 11 | 0.81 | -3.573 | 0.519 | -3.126 |
| 12 | -0.477 | -1.215 | 0.923 | -0.57 |
| 13 | 0.361 | 0.372 | -0.879 | -0.357 |