Transcription factor | Mef2c | ||||||||
Model | MEF2C_MOUSE.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 15 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | dddYTATTTWWRKhh | ||||||||
Best auROC (human) | 0.956 | ||||||||
Best auROC (mouse) | 0.929 | ||||||||
Peak sets in benchmark (human) | 6 | ||||||||
Peak sets in benchmark (mouse) | 9 | ||||||||
Aligned words | 264 | ||||||||
TF family | Regulators of differentiation {5.1.1} | ||||||||
TF subfamily | MEF-2 {5.1.1.1} | ||||||||
MGI | MGI:99458 | ||||||||
EntrezGene | GeneID:17260 (SSTAR profile) | ||||||||
UniProt ID | MEF2C_MOUSE | ||||||||
UniProt AC | Q8CFN5 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Mef2c expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 46.0 | 37.0 | 91.0 | 90.0 |
02 | 59.0 | 28.0 | 65.0 | 112.0 |
03 | 29.0 | 20.0 | 97.0 | 118.0 |
04 | 6.0 | 203.0 | 15.0 | 40.0 |
05 | 0.0 | 14.0 | 3.0 | 247.0 |
06 | 241.0 | 1.0 | 4.0 | 18.0 |
07 | 35.0 | 5.0 | 2.0 | 222.0 |
08 | 28.0 | 11.0 | 0.0 | 225.0 |
09 | 8.0 | 12.0 | 1.0 | 243.0 |
10 | 43.0 | 18.0 | 7.0 | 196.0 |
11 | 29.0 | 14.0 | 22.0 | 199.0 |
12 | 153.0 | 0.0 | 107.0 | 4.0 |
13 | 41.0 | 6.0 | 172.0 | 45.0 |
14 | 80.0 | 118.0 | 32.0 | 34.0 |
15 | 87.0 | 66.0 | 19.0 | 92.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.352 | -0.563 | 0.316 | 0.305 |
02 | -0.11 | -0.83 | -0.015 | 0.52 |
03 | -0.796 | -1.147 | 0.378 | 0.572 |
04 | -2.21 | 1.109 | -1.414 | -0.487 |
05 | -3.878 | -1.477 | -2.73 | 1.304 |
06 | 1.28 | -3.338 | -2.525 | -1.246 |
07 | -0.616 | -2.355 | -2.989 | 1.198 |
08 | -0.83 | -1.693 | -3.878 | 1.212 |
09 | -1.97 | -1.616 | -3.338 | 1.288 |
10 | -0.417 | -1.246 | -2.083 | 1.075 |
11 | -0.796 | -1.477 | -1.058 | 1.09 |
12 | 0.829 | -3.878 | 0.475 | -2.525 |
13 | -0.464 | -2.21 | 0.945 | -0.373 |
14 | 0.189 | 0.572 | -0.702 | -0.644 |
15 | 0.271 | 0.0 | -1.195 | 0.326 |