Model info
| Transcription factor | Mef2c | ||||||||
| Model | MEF2C_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dddYTATTTWWRKhh | ||||||||
| Best auROC (human) | 0.956 | ||||||||
| Best auROC (mouse) | 0.929 | ||||||||
| Peak sets in benchmark (human) | 6 | ||||||||
| Peak sets in benchmark (mouse) | 9 | ||||||||
| Aligned words | 264 | ||||||||
| TF family | Regulators of differentiation {5.1.1} | ||||||||
| TF subfamily | MEF-2 {5.1.1.1} | ||||||||
| MGI | MGI:99458 | ||||||||
| EntrezGene | GeneID:17260 (SSTAR profile) | ||||||||
| UniProt ID | MEF2C_MOUSE | ||||||||
| UniProt AC | Q8CFN5 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Mef2c expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 46.0 | 37.0 | 91.0 | 90.0 |
| 02 | 59.0 | 28.0 | 65.0 | 112.0 |
| 03 | 29.0 | 20.0 | 97.0 | 118.0 |
| 04 | 6.0 | 203.0 | 15.0 | 40.0 |
| 05 | 0.0 | 14.0 | 3.0 | 247.0 |
| 06 | 241.0 | 1.0 | 4.0 | 18.0 |
| 07 | 35.0 | 5.0 | 2.0 | 222.0 |
| 08 | 28.0 | 11.0 | 0.0 | 225.0 |
| 09 | 8.0 | 12.0 | 1.0 | 243.0 |
| 10 | 43.0 | 18.0 | 7.0 | 196.0 |
| 11 | 29.0 | 14.0 | 22.0 | 199.0 |
| 12 | 153.0 | 0.0 | 107.0 | 4.0 |
| 13 | 41.0 | 6.0 | 172.0 | 45.0 |
| 14 | 80.0 | 118.0 | 32.0 | 34.0 |
| 15 | 87.0 | 66.0 | 19.0 | 92.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.352 | -0.563 | 0.316 | 0.305 |
| 02 | -0.11 | -0.83 | -0.015 | 0.52 |
| 03 | -0.796 | -1.147 | 0.378 | 0.572 |
| 04 | -2.21 | 1.109 | -1.414 | -0.487 |
| 05 | -3.878 | -1.477 | -2.73 | 1.304 |
| 06 | 1.28 | -3.338 | -2.525 | -1.246 |
| 07 | -0.616 | -2.355 | -2.989 | 1.198 |
| 08 | -0.83 | -1.693 | -3.878 | 1.212 |
| 09 | -1.97 | -1.616 | -3.338 | 1.288 |
| 10 | -0.417 | -1.246 | -2.083 | 1.075 |
| 11 | -0.796 | -1.477 | -1.058 | 1.09 |
| 12 | 0.829 | -3.878 | 0.475 | -2.525 |
| 13 | -0.464 | -2.21 | 0.945 | -0.373 |
| 14 | 0.189 | 0.572 | -0.702 | -0.644 |
| 15 | 0.271 | 0.0 | -1.195 | 0.326 |