We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMEF2D
(GeneCards)
ModelMEF2D_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusdKYTATTTWTAR
Best auROC (human)0.843
Best auROC (mouse)0.965
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)27
Aligned words500
TF familyRegulators of differentiation {5.1.1}
TF subfamilyMEF-2 {5.1.1.1}
HGNCHGNC:6997
EntrezGeneGeneID:4209
(SSTAR profile)
UniProt IDMEF2D_HUMAN
UniProt ACQ14814
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.991949999999999
0.0005 5.994125
0.0001 8.048765
GTEx tissue expression atlas MEF2D expression
ReMap ChIP-seq dataset list MEF2D datasets
Motifs in JASPAR
MA0773.1 (MEF2D; Homo sapiens)
PCM
ACGT
01156.028.0151.0165.0
0234.032.0250.0184.0
0312.0379.030.079.0
041.010.03.0486.0
05485.01.01.013.0
0627.03.02.0468.0
0740.06.04.0450.0
0847.020.03.0430.0
09149.043.06.0302.0
1043.07.027.0423.0
11377.00.0118.05.0
1247.016.0393.044.0
PWM
ACGT
010.219-1.4540.1870.275
02-1.27-1.3280.6870.383
03-2.2341.101-1.389-0.452
04-3.903-2.394-3.3251.349
051.347-3.903-3.903-2.163
06-1.489-3.325-3.5731.311
07-1.114-2.819-3.1261.272
08-0.958-1.77-3.3251.227
090.174-1.044-2.8190.875
10-1.044-2.694-1.4891.21
111.096-4.4-0.057-2.961
12-0.958-1.9751.137-1.022