Model info
| Transcription factor | MEF2D (GeneCards) | ||||||||
| Model | MEF2D_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dKYTATTTWTAR | ||||||||
| Best auROC (human) | 0.843 | ||||||||
| Best auROC (mouse) | 0.965 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 27 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Regulators of differentiation {5.1.1} | ||||||||
| TF subfamily | MEF-2 {5.1.1.1} | ||||||||
| HGNC | HGNC:6997 | ||||||||
| EntrezGene | GeneID:4209 (SSTAR profile) | ||||||||
| UniProt ID | MEF2D_HUMAN | ||||||||
| UniProt AC | Q14814 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | MEF2D expression | ||||||||
| ReMap ChIP-seq dataset list | MEF2D datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 156.0 | 28.0 | 151.0 | 165.0 |
| 02 | 34.0 | 32.0 | 250.0 | 184.0 |
| 03 | 12.0 | 379.0 | 30.0 | 79.0 |
| 04 | 1.0 | 10.0 | 3.0 | 486.0 |
| 05 | 485.0 | 1.0 | 1.0 | 13.0 |
| 06 | 27.0 | 3.0 | 2.0 | 468.0 |
| 07 | 40.0 | 6.0 | 4.0 | 450.0 |
| 08 | 47.0 | 20.0 | 3.0 | 430.0 |
| 09 | 149.0 | 43.0 | 6.0 | 302.0 |
| 10 | 43.0 | 7.0 | 27.0 | 423.0 |
| 11 | 377.0 | 0.0 | 118.0 | 5.0 |
| 12 | 47.0 | 16.0 | 393.0 | 44.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.219 | -1.454 | 0.187 | 0.275 |
| 02 | -1.27 | -1.328 | 0.687 | 0.383 |
| 03 | -2.234 | 1.101 | -1.389 | -0.452 |
| 04 | -3.903 | -2.394 | -3.325 | 1.349 |
| 05 | 1.347 | -3.903 | -3.903 | -2.163 |
| 06 | -1.489 | -3.325 | -3.573 | 1.311 |
| 07 | -1.114 | -2.819 | -3.126 | 1.272 |
| 08 | -0.958 | -1.77 | -3.325 | 1.227 |
| 09 | 0.174 | -1.044 | -2.819 | 0.875 |
| 10 | -1.044 | -2.694 | -1.489 | 1.21 |
| 11 | 1.096 | -4.4 | -0.057 | -2.961 |
| 12 | -0.958 | -1.975 | 1.137 | -1.022 |