Model info
| Transcription factor | MEIS1 (GeneCards) | ||||||||
| Model | MEIS1_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | dTGATWdATddb | ||||||||
| Best auROC (human) | 0.816 | ||||||||
| Best auROC (mouse) | 0.945 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 37 | ||||||||
| Aligned words | 499 | ||||||||
| TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
| TF subfamily | MEIS {3.1.4.2} | ||||||||
| HGNC | HGNC:7000 | ||||||||
| EntrezGene | GeneID:4211 (SSTAR profile) | ||||||||
| UniProt ID | MEIS1_HUMAN | ||||||||
| UniProt AC | O00470 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | MEIS1 expression | ||||||||
| ReMap ChIP-seq dataset list | MEIS1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 220.0 | 63.0 | 126.0 | 90.0 |
| 02 | 94.0 | 1.0 | 8.0 | 396.0 |
| 03 | 37.0 | 10.0 | 441.0 | 11.0 |
| 04 | 489.0 | 3.0 | 3.0 | 4.0 |
| 05 | 16.0 | 19.0 | 19.0 | 445.0 |
| 06 | 64.0 | 5.0 | 53.0 | 377.0 |
| 07 | 96.0 | 16.0 | 130.0 | 257.0 |
| 08 | 487.0 | 2.0 | 8.0 | 2.0 |
| 09 | 17.0 | 35.0 | 15.0 | 432.0 |
| 10 | 77.0 | 22.0 | 265.0 | 135.0 |
| 11 | 152.0 | 32.0 | 222.0 | 93.0 |
| 12 | 62.0 | 187.0 | 128.0 | 122.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.562 | -0.671 | 0.01 | -0.322 |
| 02 | -0.279 | -3.901 | -2.582 | 1.147 |
| 03 | -1.187 | -2.392 | 1.254 | -2.309 |
| 04 | 1.357 | -3.323 | -3.323 | -3.124 |
| 05 | -1.973 | -1.816 | -1.816 | 1.263 |
| 06 | -0.656 | -2.959 | -0.84 | 1.098 |
| 07 | -0.258 | -1.973 | 0.041 | 0.716 |
| 08 | 1.353 | -3.571 | -2.582 | -3.571 |
| 09 | -1.918 | -1.24 | -2.032 | 1.233 |
| 10 | -0.475 | -1.679 | 0.747 | 0.078 |
| 11 | 0.195 | -1.326 | 0.571 | -0.29 |
| 12 | -0.687 | 0.401 | 0.025 | -0.022 |