We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMEIS1
(GeneCards)
ModelMEIS1_HUMAN.H11MO.1.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
B
Motif rank
1
ConsensusdhTGACARv
Best auROC (human)0.778
Best auROC (mouse)0.854
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)37
Aligned words500
TF familyTALE-type homeo domain factors {3.1.4}
TF subfamilyMEIS {3.1.4.2}
HGNCHGNC:7000
EntrezGeneGeneID:4211
(SSTAR profile)
UniProt IDMEIS1_HUMAN
UniProt ACO00470
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.260465
0.0005 6.16724
0.0001 7.485995
GTEx tissue expression atlas MEIS1 expression
ReMap ChIP-seq dataset list MEIS1 datasets
Motifs in JASPAR
PCM
ACGT
0188.056.0269.087.0
02133.0229.064.074.0
0376.02.013.0409.0
041.02.0496.01.0
05474.019.07.00.0
0620.0476.04.00.0
07475.01.04.020.0
0863.036.0343.058.0
09137.0166.0145.052.0
PWM
ACGT
01-0.346-0.7880.76-0.357
020.0610.6-0.658-0.516
03-0.49-3.573-2.1631.177
04-3.903-3.5731.369-3.903
051.324-1.818-2.694-4.4
06-1.771.328-3.126-4.4
071.326-3.903-3.126-1.77
08-0.673-1.2151.002-0.754
090.0910.2810.147-0.86