Model info
| Transcription factor | Meis1 | ||||||||
| Model | MEIS1_MOUSE.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 12 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | bWShTGACAKvh | ||||||||
| Best auROC (human) | 0.708 | ||||||||
| Best auROC (mouse) | 0.891 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 37 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | TALE-type homeo domain factors {3.1.4} | ||||||||
| TF subfamily | MEIS {3.1.4.2} | ||||||||
| MGI | MGI:104717 | ||||||||
| EntrezGene | GeneID:17268 (SSTAR profile) | ||||||||
| UniProt ID | MEIS1_MOUSE | ||||||||
| UniProt AC | Q60954 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Meis1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 56.0 | 136.0 | 199.0 | 109.0 |
| 02 | 78.0 | 43.0 | 54.0 | 325.0 |
| 03 | 30.0 | 68.0 | 359.0 | 43.0 |
| 04 | 168.0 | 174.0 | 70.0 | 88.0 |
| 05 | 53.0 | 5.0 | 36.0 | 406.0 |
| 06 | 4.0 | 24.0 | 471.0 | 1.0 |
| 07 | 464.0 | 3.0 | 32.0 | 1.0 |
| 08 | 32.0 | 448.0 | 14.0 | 6.0 |
| 09 | 467.0 | 3.0 | 1.0 | 29.0 |
| 10 | 71.0 | 11.0 | 318.0 | 100.0 |
| 11 | 128.0 | 176.0 | 148.0 | 48.0 |
| 12 | 130.0 | 85.0 | 71.0 | 214.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.788 | 0.083 | 0.46 | -0.135 |
| 02 | -0.464 | -1.044 | -0.823 | 0.948 |
| 03 | -1.389 | -0.599 | 1.047 | -1.044 |
| 04 | 0.293 | 0.327 | -0.57 | -0.346 |
| 05 | -0.841 | -2.961 | -1.215 | 1.17 |
| 06 | -3.126 | -1.6 | 1.317 | -3.903 |
| 07 | 1.303 | -3.325 | -1.328 | -3.903 |
| 08 | -1.328 | 1.268 | -2.096 | -2.819 |
| 09 | 1.309 | -3.325 | -3.903 | -1.421 |
| 10 | -0.556 | -2.311 | 0.926 | -0.22 |
| 11 | 0.023 | 0.339 | 0.167 | -0.938 |
| 12 | 0.039 | -0.38 | -0.556 | 0.533 |