We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMGA
(GeneCards)
ModelMGAP_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceHT-SELEX
Model releaseHOCOMOCOv10
Model length16
Quality
D
Motif rank
0
ConsensusRRGTGTKAnWTWTMRC
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words6178
TF familybHLH-ZIP factors {1.2.6}
TBX6-related factors {6.5.5}
TF subfamilyMad-like factors {1.2.6.7}
MGA (MAD5) {6.5.5.0.2}
HGNCHGNC:14010
EntrezGeneGeneID:23269
(SSTAR profile)
UniProt IDMGAP_HUMAN
UniProt ACQ8IWI9
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 1.46426
0.0005 2.8303599999999998
0.0001 5.70581
GTEx tissue expression atlas MGA expression
ReMap ChIP-seq dataset list MGA datasets
Motifs in JASPAR
PCM
ACGT
014018.25288.251204.25665.25
02721.0534.04585.0336.0
0387.5126.55868.593.5
0462.5605.562.55445.5
051.01.06173.01.0
06150.0467.070.05489.0
0777.0352.04702.01045.0
085923.015.0204.034.0
093504.0568.0568.01536.0
102718.0220.0368.02870.0
11866.5210.5157.54941.5
12610.5497.5237.54830.5
13207.0211.034.05724.0
14779.04764.0416.0217.0
154043.0168.01336.0629.0
1651.56008.542.573.5
PWM
ACGT
010.956-1.672-0.248-0.84
02-0.76-1.0591.087-1.52
03-2.847-2.4861.334-2.783
04-3.174-0.934-3.1741.259
05-6.186-6.1861.385-6.186
06-2.318-1.193-3.0641.267
07-2.972-1.4741.113-0.39
081.343-4.5-2.015-3.755
090.819-0.998-0.998-0.005
100.565-1.94-1.430.619
11-0.577-1.984-2.271.162
12-0.926-1.13-1.8641.14
13-2.0-1.981-3.7551.309
14-0.6831.126-1.308-1.954
150.962-2.207-0.144-0.896
16-3.361.358-3.544-3.017