We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMITF
(GeneCards)
ModelMITF_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
A
Motif rank
0
ConsensusnvYCACGTGAChn
Best auROC (human)0.999
Best auROC (mouse)0.816
Peak sets in benchmark (human)28
Peak sets in benchmark (mouse)3
Aligned words518
TF familybHLH-ZIP factors {1.2.6}
TF subfamilyTFE3-like factors {1.2.6.1}
HGNCHGNC:7105
EntrezGeneGeneID:4286
(SSTAR profile)
UniProt IDMITF_HUMAN
UniProt ACO75030
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.13176
0.0005 7.402660000000001
0.0001 12.095155
GTEx tissue expression atlas MITF expression
ReMap ChIP-seq dataset list MITF datasets
Motifs in JASPAR
MA0620.1 (Mitf; Mus musculus)
MA0620.2 (MITF; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0140.022.075.03.080.034.034.04.061.034.035.03.021.015.036.03.0
028.048.025.0121.09.043.06.047.09.024.017.0130.01.05.06.01.0
030.026.01.00.00.0120.00.00.00.054.00.00.00.0299.00.00.0
040.00.00.00.0447.015.06.031.01.00.00.00.00.00.00.00.0
051.0408.07.032.00.015.00.00.00.05.00.01.00.022.01.08.0
060.00.01.00.090.08.0352.00.01.03.04.00.00.00.041.00.0
073.00.00.088.00.00.00.011.01.00.00.0397.00.00.00.00.0
080.00.04.00.00.00.00.00.00.00.00.00.00.03.0492.01.0
090.00.00.00.02.01.00.00.0443.028.017.08.01.00.00.00.0
101.0375.014.056.08.010.01.010.00.014.00.03.00.06.00.02.0
111.05.03.00.084.0228.016.077.04.07.01.03.09.043.09.010.0
1211.033.029.025.070.088.025.0100.07.016.03.03.08.025.027.030.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.244-0.3460.868-2.2340.9320.0830.083-1.9750.6630.0830.112-2.234-0.392-0.7210.14-2.234
02-1.3280.425-0.221.345-1.2150.316-1.60.404-1.215-0.26-0.5991.416-3.126-1.77-1.6-3.126
03-4.4-0.181-3.126-4.4-4.41.336-4.4-4.4-4.40.542-4.4-4.4-4.42.247-4.4-4.4
04-4.4-4.4-4.4-4.42.649-0.721-1.6-0.008-3.126-4.4-4.4-4.4-4.4-4.4-4.4-4.4
05-3.1262.558-1.4540.023-4.4-0.721-4.4-4.4-4.4-1.77-4.4-3.126-4.4-0.346-3.126-1.328
06-4.4-4.4-3.126-4.41.05-1.3282.41-4.4-3.126-2.234-1.975-4.4-4.4-4.40.269-4.4
07-2.234-4.4-4.41.027-4.4-4.4-4.4-1.022-3.126-4.4-4.42.531-4.4-4.4-4.4-4.4
08-4.4-4.4-1.975-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-2.2342.745-3.126
09-4.4-4.4-4.4-4.4-2.584-3.126-4.4-4.42.64-0.108-0.599-1.328-3.126-4.4-4.4-4.4
10-3.1262.474-0.7880.578-1.328-1.114-3.126-1.114-4.4-0.788-4.4-2.234-4.4-1.6-4.4-2.584
11-3.126-1.77-2.234-4.40.9811.977-0.6580.894-1.975-1.454-3.126-2.234-1.2150.316-1.215-1.114
12-1.0220.054-0.074-0.220.81.027-0.221.155-1.454-0.658-2.234-2.234-1.328-0.22-0.144-0.04