We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMITF
(GeneCards)
ModelMITF_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusYCACGTGACh
Best auROC (human)0.999
Best auROC (mouse)0.824
Peak sets in benchmark (human)28
Peak sets in benchmark (mouse)3
Aligned words516
TF familybHLH-ZIP factors {1.2.6}
TF subfamilyTFE3-like factors {1.2.6.1}
HGNCHGNC:7105
EntrezGeneGeneID:4286
(SSTAR profile)
UniProt IDMITF_HUMAN
UniProt ACO75030
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 2.8417250000000003
0.0005 4.003665
0.0001 6.29701
GTEx tissue expression atlas MITF expression
ReMap ChIP-seq dataset list MITF datasets
Motifs in JASPAR
PCM
ACGT
0127.0119.057.0297.0
020.0499.01.00.0
03440.013.06.041.0
040.0365.08.0127.0
052.09.0489.00.0
062.00.06.0492.0
070.03.0497.00.0
08445.019.028.08.0
090.0383.023.094.0
1072.0262.036.0130.0
PWM
ACGT
01-1.489-0.049-0.7710.858
02-4.41.375-3.903-4.4
031.25-2.163-2.819-1.09
04-4.41.063-2.5840.016
05-3.573-2.4841.355-4.4
06-3.573-4.4-2.8191.361
07-4.4-3.3251.371-4.4
081.261-1.818-1.454-2.584
09-4.41.111-1.64-0.281
10-0.5430.734-1.2150.039