Model info
| Transcription factor | MITF (GeneCards) | ||||||||
| Model | MITF_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | YCACGTGACh | ||||||||
| Best auROC (human) | 0.999 | ||||||||
| Best auROC (mouse) | 0.824 | ||||||||
| Peak sets in benchmark (human) | 28 | ||||||||
| Peak sets in benchmark (mouse) | 3 | ||||||||
| Aligned words | 516 | ||||||||
| TF family | bHLH-ZIP factors {1.2.6} | ||||||||
| TF subfamily | TFE3-like factors {1.2.6.1} | ||||||||
| HGNC | HGNC:7105 | ||||||||
| EntrezGene | GeneID:4286 (SSTAR profile) | ||||||||
| UniProt ID | MITF_HUMAN | ||||||||
| UniProt AC | O75030 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | MITF expression | ||||||||
| ReMap ChIP-seq dataset list | MITF datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 27.0 | 119.0 | 57.0 | 297.0 |
| 02 | 0.0 | 499.0 | 1.0 | 0.0 |
| 03 | 440.0 | 13.0 | 6.0 | 41.0 |
| 04 | 0.0 | 365.0 | 8.0 | 127.0 |
| 05 | 2.0 | 9.0 | 489.0 | 0.0 |
| 06 | 2.0 | 0.0 | 6.0 | 492.0 |
| 07 | 0.0 | 3.0 | 497.0 | 0.0 |
| 08 | 445.0 | 19.0 | 28.0 | 8.0 |
| 09 | 0.0 | 383.0 | 23.0 | 94.0 |
| 10 | 72.0 | 262.0 | 36.0 | 130.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.489 | -0.049 | -0.771 | 0.858 |
| 02 | -4.4 | 1.375 | -3.903 | -4.4 |
| 03 | 1.25 | -2.163 | -2.819 | -1.09 |
| 04 | -4.4 | 1.063 | -2.584 | 0.016 |
| 05 | -3.573 | -2.484 | 1.355 | -4.4 |
| 06 | -3.573 | -4.4 | -2.819 | 1.361 |
| 07 | -4.4 | -3.325 | 1.371 | -4.4 |
| 08 | 1.261 | -1.818 | -1.454 | -2.584 |
| 09 | -4.4 | 1.111 | -1.64 | -0.281 |
| 10 | -0.543 | 0.734 | -1.215 | 0.039 |