We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMitf
ModelMITF_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusnbChYGTGAShn
Best auROC (human)0.995
Best auROC (mouse)0.839
Peak sets in benchmark (human)28
Peak sets in benchmark (mouse)3
Aligned words507
TF familybHLH-ZIP factors {1.2.6}
TF subfamilyTFE3-like factors {1.2.6.1}
MGIMGI:104554
EntrezGeneGeneID:17342
(SSTAR profile)
UniProt IDMITF_MOUSE
UniProt ACQ08874
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 8.602865000000001
0.0005 10.357535
0.0001 13.89568
GTEx tissue expression atlas Mitf expression
Motifs in JASPAR
MA0620.1 (Mitf; Mus musculus)
MA0620.2 (MITF; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0114.043.048.019.013.055.013.030.019.056.023.072.05.041.029.020.0
021.049.01.00.05.0180.01.09.02.0108.03.00.00.0134.01.06.0
031.01.06.00.0217.0102.045.0107.02.01.02.01.02.07.05.01.0
042.0135.09.076.00.077.03.031.01.049.04.04.02.075.07.025.0
050.00.05.00.063.08.0265.00.04.07.011.01.06.01.0126.03.0
060.00.00.073.00.00.00.016.02.00.02.0403.00.00.00.04.0
070.00.02.00.00.00.00.00.00.00.02.00.00.01.0495.00.0
080.00.00.00.01.00.00.00.0437.022.018.022.00.00.00.00.0
0911.0289.070.068.01.07.07.07.00.013.00.05.01.011.07.03.0
105.04.00.04.028.0134.020.0138.010.045.07.022.012.031.013.027.0
116.011.029.09.039.068.047.060.03.011.020.06.025.072.054.040.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.7880.3160.425-0.49-0.860.56-0.86-0.04-0.490.578-0.3020.828-1.770.269-0.074-0.439
02-3.1260.445-3.126-4.4-1.771.741-3.126-1.215-2.5841.231-2.234-4.4-4.41.446-3.126-1.6
03-3.126-3.126-1.6-4.41.9271.1740.3611.222-2.584-3.126-2.584-3.126-2.584-1.454-1.77-3.126
04-2.5841.454-1.2150.881-4.40.894-2.234-0.008-3.1260.445-1.975-1.975-2.5840.868-1.454-0.22
05-4.4-4.4-1.77-4.40.695-1.3282.127-4.4-1.975-1.454-1.022-3.126-1.6-3.1261.385-2.234
06-4.4-4.4-4.40.841-4.4-4.4-4.4-0.658-2.584-4.4-2.5842.546-4.4-4.4-4.4-1.975
07-4.4-4.4-2.584-4.4-4.4-4.4-4.4-4.4-4.4-4.4-2.584-4.4-4.4-3.1262.751-4.4
08-4.4-4.4-4.4-4.4-3.126-4.4-4.4-4.42.626-0.346-0.543-0.346-4.4-4.4-4.4-4.4
09-1.0222.2130.80.771-3.126-1.454-1.454-1.454-4.4-0.86-4.4-1.77-3.126-1.022-1.454-2.234
10-1.77-1.975-4.4-1.975-0.1081.446-0.4391.476-1.1140.361-1.454-0.346-0.938-0.008-0.86-0.144
11-1.6-1.022-0.074-1.2150.2190.7710.4040.646-2.234-1.022-0.439-1.6-0.220.8280.5420.244