Transcription factor | Mitf | ||||||||
Model | MITF_MOUSE.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 10 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | bChYGTGMYh | ||||||||
Best auROC (human) | 0.996 | ||||||||
Best auROC (mouse) | 0.835 | ||||||||
Peak sets in benchmark (human) | 28 | ||||||||
Peak sets in benchmark (mouse) | 3 | ||||||||
Aligned words | 501 | ||||||||
TF family | bHLH-ZIP factors {1.2.6} | ||||||||
TF subfamily | TFE3-like factors {1.2.6.1} | ||||||||
MGI | MGI:104554 | ||||||||
EntrezGene | GeneID:17342 (SSTAR profile) | ||||||||
UniProt ID | MITF_MOUSE | ||||||||
UniProt AC | Q08874 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Mitf expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 45.0 | 198.0 | 88.0 | 169.0 |
02 | 2.0 | 486.0 | 6.0 | 6.0 |
03 | 228.0 | 107.0 | 30.0 | 135.0 |
04 | 4.0 | 311.0 | 23.0 | 162.0 |
05 | 59.0 | 36.0 | 400.0 | 5.0 |
06 | 8.0 | 1.0 | 11.0 | 480.0 |
07 | 0.0 | 6.0 | 490.0 | 4.0 |
08 | 387.0 | 58.0 | 29.0 | 26.0 |
09 | 6.0 | 365.0 | 48.0 | 81.0 |
10 | 40.0 | 195.0 | 34.0 | 231.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -1.0 | 0.455 | -0.346 | 0.298 |
02 | -3.573 | 1.349 | -2.819 | -2.819 |
03 | 0.595 | -0.153 | -1.389 | 0.076 |
04 | -3.126 | 0.904 | -1.64 | 0.256 |
05 | -0.737 | -1.215 | 1.155 | -2.961 |
06 | -2.584 | -3.903 | -2.311 | 1.336 |
07 | -4.4 | -2.819 | 1.357 | -3.126 |
08 | 1.122 | -0.754 | -1.421 | -1.525 |
09 | -2.819 | 1.063 | -0.938 | -0.427 |
10 | -1.114 | 0.44 | -1.27 | 0.608 |