We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMsgn1
ModelMSGN1_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
C
Motif rank
0
ConsensusnvCCATTTGKYhhn
Best auROC (human)
Best auROC (mouse)0.999
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)4
Aligned words500
TF familyTal-related factors {1.2.3}
TF subfamilyMesp-like factors {1.2.3.3}
MGIMGI:1860483
EntrezGeneGeneID:56184
(SSTAR profile)
UniProt IDMSGN1_MOUSE
UniProt ACQ9JK54
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.748310000000001
0.0005 9.377075000000001
0.0001 15.132415000000002
GTEx tissue expression atlas Msgn1 expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0138.07.094.07.088.011.018.014.057.014.053.06.025.015.046.07.0
026.0195.07.00.05.042.00.00.04.0205.02.00.00.032.02.00.0
030.015.00.00.01.0473.00.00.00.011.00.00.00.00.00.00.0
041.00.00.00.0453.07.05.034.00.00.00.00.00.00.00.00.0
050.04.03.0447.00.00.00.07.00.00.00.05.00.00.01.033.0
060.00.00.00.00.01.00.03.00.04.00.00.032.073.00.0387.0
070.00.00.032.00.00.00.078.00.00.00.00.00.00.00.0390.0
080.00.00.00.00.00.00.00.00.00.00.00.00.00.0499.01.0
090.00.00.00.00.00.00.00.02.079.0172.0246.00.00.01.00.0
100.01.01.00.00.034.00.045.03.083.01.086.00.0130.07.0109.0
111.02.00.00.054.0120.010.064.00.06.01.02.017.0119.056.048.0
129.025.025.013.059.098.05.085.06.020.014.027.014.057.018.025.0
1317.020.031.020.044.057.04.095.014.022.019.07.07.061.051.031.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
010.193-1.4541.093-1.4541.027-1.022-0.543-0.7880.595-0.7880.523-1.6-0.22-0.7210.383-1.454
02-1.61.821-1.454-4.4-1.770.293-4.4-4.4-1.9751.871-2.584-4.4-4.40.023-2.584-4.4
03-4.4-0.721-4.4-4.4-3.1262.706-4.4-4.4-4.4-1.022-4.4-4.4-4.4-4.4-4.4-4.4
04-3.126-4.4-4.4-4.42.662-1.454-1.770.083-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
05-4.4-1.975-2.2342.649-4.4-4.4-4.4-1.454-4.4-4.4-4.4-1.77-4.4-4.4-3.1260.054
06-4.4-4.4-4.4-4.4-4.4-3.126-4.4-2.234-4.4-1.975-4.4-4.40.0230.841-4.42.505
07-4.4-4.4-4.40.023-4.4-4.4-4.40.907-4.4-4.4-4.4-4.4-4.4-4.4-4.42.513
08-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.759-3.126
09-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-2.5840.921.6952.053-4.4-4.4-3.126-4.4
10-4.4-3.126-3.126-4.4-4.40.083-4.40.361-2.2340.969-3.1261.004-4.41.416-1.4541.241
11-3.126-2.584-4.4-4.40.5421.336-1.1140.711-4.4-1.6-3.126-2.584-0.5991.3280.5780.425
12-1.215-0.22-0.22-0.860.631.135-1.770.993-1.6-0.439-0.788-0.144-0.7880.595-0.543-0.22
13-0.599-0.439-0.008-0.4390.3390.595-1.9751.104-0.788-0.346-0.49-1.454-1.4540.6630.485-0.008