MSGN1_MOUSE.H11MO.0.C motif - HOmo sapiens COmprehensive MOdel COllection

Check the newest release v12

Model info

Transcription factor

Model

MSGN1_MOUSE.H11MO.0.C

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

ChIP-Seq

Model release

HOCOMOCOv11

Model length

12

Quality

C

Motif rank

0

Consensus

nCCATTTGKYhh

Best auROC (human)

Best auROC (mouse)

0.999

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

4

Aligned words

500

TF family

Tal-related factors {1.2.3}

TF subfamily

Mesp-like factors {1.2.3.3}

MGI

EntrezGene

GeneID:56184
(SSTAR profile)

UniProt ID

UniProt AC

Q9JK54
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	3.84898
0.0005	5.09924
0.0001	7.636939999999999

GTEx tissue expression atlas

Msgn1 expression

Motifs in JASPAR

PCM

	A	C	G	T
01	211.0	48.0	211.0	30.0
02	16.0	470.0	13.0	1.0
03	4.0	496.0	0.0	0.0
04	459.0	4.0	3.0	34.0
05	0.0	4.0	8.0	488.0
06	29.0	76.0	0.0	395.0
07	0.0	0.0	0.0	500.0
08	0.0	0.0	500.0	0.0
09	3.0	71.0	182.0	244.0
10	2.0	239.0	15.0	244.0
11	76.0	244.0	66.0	114.0
12	87.0	195.0	63.0	155.0

PWM

	A	C	G	T
01	0.519	-0.938	0.519	-1.389
02	-1.975	1.315	-2.163	-3.903
03	-3.126	1.369	-4.4	-4.4
04	1.292	-3.126	-3.325	-1.27
05	-4.4	-3.126	-2.584	1.353
06	-1.421	-0.49	-4.4	1.142
07	-4.4	-4.4	-4.4	1.377
08	-4.4	-4.4	1.377	-4.4
09	-3.325	-0.556	0.372	0.663
10	-3.573	0.642	-2.034	0.663
11	-0.49	0.663	-0.628	-0.091
12	-0.357	0.44	-0.673	0.213