Model info
| Transcription factor | MSX2 (GeneCards) | ||||||||
| Model | MSX2_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 7 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | TAATTnb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 12 | ||||||||
| TF family | NK-related factors {3.1.2} | ||||||||
| TF subfamily | MSX {3.1.2.11} | ||||||||
| HGNC | HGNC:7392 | ||||||||
| EntrezGene | GeneID:4488 (SSTAR profile) | ||||||||
| UniProt ID | MSX2_HUMAN | ||||||||
| UniProt AC | P35548 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | MSX2 expression | ||||||||
| ReMap ChIP-seq dataset list | MSX2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.0 | 0.0 | 0.898 | 10.102 |
| 02 | 10.102 | 0.0 | 0.898 | 0.0 |
| 03 | 9.99 | 0.0 | 1.01 | 0.0 |
| 04 | 0.0 | 0.0 | 0.0 | 11.0 |
| 05 | 2.133 | 0.0 | 0.0 | 8.867 |
| 06 | 2.02 | 1.908 | 3.929 | 3.143 |
| 07 | 1.263 | 1.375 | 3.171 | 5.191 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.721 | -1.721 | -0.805 | 1.162 |
| 02 | 1.162 | -1.721 | -0.805 | -1.721 |
| 03 | 1.151 | -1.721 | -0.733 | -1.721 |
| 04 | -1.721 | -1.721 | -1.721 | 1.242 |
| 05 | -0.204 | -1.721 | -1.721 | 1.039 |
| 06 | -0.246 | -0.289 | 0.301 | 0.111 |
| 07 | -0.587 | -0.529 | 0.118 | 0.547 |