Check the newest release v12
Model info
Transcription factorMYCN
(GeneCards)
ModelMYCN_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusnvvvCACGTGKv
Best auROC (human)0.935
Best auROC (mouse)0.899
Peak sets in benchmark (human)32
Peak sets in benchmark (mouse)10
Aligned words402
TF familybHLH-ZIP factors {1.2.6}
TF subfamilyMyc / Max factors {1.2.6.5}
HGNCHGNC:7559
EntrezGeneGeneID:4613
(SSTAR profile)
UniProt IDMYCN_HUMAN
UniProt ACP04198
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.143095
0.0005 7.158510000000001
0.0001 11.312965
GTEx tissue expression atlas MYCN expression
ReMap ChIP-seq dataset list MYCN datasets
Motifs in JASPAR
MA0104.1 (Mycn; Mus musculus)
MA0104.2 (Mycn; Mus musculus)
MA0104.3 (Mycn; Mus musculus)
MA0104.4 (MYCN; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0123.04.035.02.036.032.042.014.038.032.061.05.013.010.038.06.0
0241.018.043.08.034.012.022.010.064.048.051.013.07.04.011.05.0
0333.040.068.05.016.014.050.02.014.064.016.033.09.07.016.04.0
041.071.00.00.00.0125.00.00.00.0149.00.01.00.044.00.00.0
050.00.01.00.0376.01.012.00.00.00.00.00.00.00.01.00.0
060.0366.06.04.00.01.00.00.00.014.00.00.00.00.00.00.0
070.00.00.00.039.02.0340.00.03.00.03.00.00.00.04.00.0
081.00.00.041.02.00.00.00.039.028.05.0275.00.00.00.00.0
090.00.042.00.00.03.023.02.02.00.03.00.01.00.0308.07.0
100.00.01.02.00.00.02.01.021.028.0293.034.01.01.07.00.0
113.010.05.04.07.010.09.03.051.0121.087.044.07.015.012.03.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.06-1.7360.355-2.3470.3830.2660.535-0.5460.4360.2660.906-1.53-0.618-0.8720.436-1.359
020.511-0.30.559-1.0860.326-0.696-0.103-0.8720.9530.6680.728-0.618-1.213-1.736-0.78-1.53
030.2960.4871.014-1.53-0.416-0.5460.708-2.347-0.5460.953-0.4160.296-0.973-1.213-0.416-1.736
04-2.8941.057-4.197-4.197-4.1971.62-4.197-4.197-4.1971.795-4.197-2.894-4.1970.581-4.197-4.197
05-4.197-4.197-2.894-4.1972.719-2.894-0.696-4.197-4.197-4.197-4.197-4.197-4.197-4.197-2.894-4.197
06-4.1972.692-1.359-1.736-4.197-2.894-4.197-4.197-4.197-0.546-4.197-4.197-4.197-4.197-4.197-4.197
07-4.197-4.197-4.197-4.1970.462-2.3472.619-4.197-1.995-4.197-1.995-4.197-4.197-4.197-1.736-4.197
08-2.894-4.197-4.1970.511-2.347-4.197-4.197-4.1970.4620.134-1.532.407-4.197-4.197-4.197-4.197
09-4.197-4.1970.535-4.197-4.197-1.995-0.06-2.347-2.347-4.197-1.995-4.197-2.894-4.1972.52-1.213
10-4.197-4.197-2.894-2.347-4.197-4.197-2.347-2.894-0.1490.1342.470.326-2.894-2.894-1.213-4.197
11-1.995-0.872-1.53-1.736-1.213-0.872-0.973-1.9950.7281.5881.2590.581-1.213-0.479-0.696-1.995