We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMYCN
(GeneCards)
ModelMYCN_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusnvvvCACGTGKv
Best auROC (human)0.935
Best auROC (mouse)0.899
Peak sets in benchmark (human)32
Peak sets in benchmark (mouse)10
Aligned words402
TF familybHLH-ZIP factors {1.2.6}
TF subfamilyMyc / Max factors {1.2.6.5}
HGNCHGNC:7559
EntrezGeneGeneID:4613
(SSTAR profile)
UniProt IDMYCN_HUMAN
UniProt ACP04198
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.143095
0.0005 7.158510000000001
0.0001 11.312965
GTEx tissue expression atlas MYCN expression
ReMap ChIP-seq dataset list MYCN datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0123.04.035.02.036.032.042.014.038.032.061.05.013.010.038.06.0
0241.018.043.08.034.012.022.010.064.048.051.013.07.04.011.05.0
0333.040.068.05.016.014.050.02.014.064.016.033.09.07.016.04.0
041.071.00.00.00.0125.00.00.00.0149.00.01.00.044.00.00.0
050.00.01.00.0376.01.012.00.00.00.00.00.00.00.01.00.0
060.0366.06.04.00.01.00.00.00.014.00.00.00.00.00.00.0
070.00.00.00.039.02.0340.00.03.00.03.00.00.00.04.00.0
081.00.00.041.02.00.00.00.039.028.05.0275.00.00.00.00.0
090.00.042.00.00.03.023.02.02.00.03.00.01.00.0308.07.0
100.00.01.02.00.00.02.01.021.028.0293.034.01.01.07.00.0
113.010.05.04.07.010.09.03.051.0121.087.044.07.015.012.03.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.06-1.7360.355-2.3470.3830.2660.535-0.5460.4360.2660.906-1.53-0.618-0.8720.436-1.359
020.511-0.30.559-1.0860.326-0.696-0.103-0.8720.9530.6680.728-0.618-1.213-1.736-0.78-1.53
030.2960.4871.014-1.53-0.416-0.5460.708-2.347-0.5460.953-0.4160.296-0.973-1.213-0.416-1.736
04-2.8941.057-4.197-4.197-4.1971.62-4.197-4.197-4.1971.795-4.197-2.894-4.1970.581-4.197-4.197
05-4.197-4.197-2.894-4.1972.719-2.894-0.696-4.197-4.197-4.197-4.197-4.197-4.197-4.197-2.894-4.197
06-4.1972.692-1.359-1.736-4.197-2.894-4.197-4.197-4.197-0.546-4.197-4.197-4.197-4.197-4.197-4.197
07-4.197-4.197-4.197-4.1970.462-2.3472.619-4.197-1.995-4.197-1.995-4.197-4.197-4.197-1.736-4.197
08-2.894-4.197-4.1970.511-2.347-4.197-4.197-4.1970.4620.134-1.532.407-4.197-4.197-4.197-4.197
09-4.197-4.1970.535-4.197-4.197-1.995-0.06-2.347-2.347-4.197-1.995-4.197-2.894-4.1972.52-1.213
10-4.197-4.197-2.894-2.347-4.197-4.197-2.347-2.894-0.1490.1342.470.326-2.894-2.894-1.213-4.197
11-1.995-0.872-1.53-1.736-1.213-0.872-0.973-1.9950.7281.5881.2590.581-1.213-0.479-0.696-1.995