We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMYCN
(GeneCards)
ModelMYCN_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length12
Quality
A
Motif rank
0
ConsensusvRvCACGTGbdv
Best auROC (human)0.919
Best auROC (mouse)0.899
Peak sets in benchmark (human)32
Peak sets in benchmark (mouse)10
Aligned words501
TF familybHLH-ZIP factors {1.2.6}
TF subfamilyMyc / Max factors {1.2.6.5}
HGNCHGNC:7559
EntrezGeneGeneID:4613
(SSTAR profile)
UniProt IDMYCN_HUMAN
UniProt ACP04198
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.32841
0.0005 4.19721
0.0001 5.938345
GTEx tissue expression atlas MYCN expression
ReMap ChIP-seq dataset list MYCN datasets
Motifs in JASPAR
PCM
ACGT
01146.085.0227.041.0
02132.024.0314.029.0
0380.0282.078.059.0
0412.0485.00.02.0
05426.03.041.029.0
063.0448.02.046.0
0740.06.0448.05.0
0844.038.01.0416.0
091.00.0486.012.0
1032.0142.0267.058.0
11109.060.0203.0127.0
1297.0204.0163.035.0
PWM
ACGT
010.156-0.3780.593-1.088
020.056-1.5980.916-1.419
03-0.4370.809-0.462-0.735
04-2.2321.349-4.398-3.571
051.219-3.323-1.088-1.419
06-3.3231.27-3.571-0.977
07-1.112-2.8171.27-2.959
08-1.02-1.161-3.9011.196
09-3.901-4.3981.351-2.232
10-1.3260.1280.754-0.752
11-0.133-0.7190.4820.018
12-0.2480.4870.265-1.24