Transcription factor | MYCN (GeneCards) | ||||||||
Model | MYCN_HUMAN.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 12 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | vRvCACGTGbdv | ||||||||
Best auROC (human) | 0.919 | ||||||||
Best auROC (mouse) | 0.899 | ||||||||
Peak sets in benchmark (human) | 32 | ||||||||
Peak sets in benchmark (mouse) | 10 | ||||||||
Aligned words | 501 | ||||||||
TF family | bHLH-ZIP factors {1.2.6} | ||||||||
TF subfamily | Myc / Max factors {1.2.6.5} | ||||||||
HGNC | HGNC:7559 | ||||||||
EntrezGene | GeneID:4613 (SSTAR profile) | ||||||||
UniProt ID | MYCN_HUMAN | ||||||||
UniProt AC | P04198 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | MYCN expression | ||||||||
ReMap ChIP-seq dataset list | MYCN datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 146.0 | 85.0 | 227.0 | 41.0 |
02 | 132.0 | 24.0 | 314.0 | 29.0 |
03 | 80.0 | 282.0 | 78.0 | 59.0 |
04 | 12.0 | 485.0 | 0.0 | 2.0 |
05 | 426.0 | 3.0 | 41.0 | 29.0 |
06 | 3.0 | 448.0 | 2.0 | 46.0 |
07 | 40.0 | 6.0 | 448.0 | 5.0 |
08 | 44.0 | 38.0 | 1.0 | 416.0 |
09 | 1.0 | 0.0 | 486.0 | 12.0 |
10 | 32.0 | 142.0 | 267.0 | 58.0 |
11 | 109.0 | 60.0 | 203.0 | 127.0 |
12 | 97.0 | 204.0 | 163.0 | 35.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.156 | -0.378 | 0.593 | -1.088 |
02 | 0.056 | -1.598 | 0.916 | -1.419 |
03 | -0.437 | 0.809 | -0.462 | -0.735 |
04 | -2.232 | 1.349 | -4.398 | -3.571 |
05 | 1.219 | -3.323 | -1.088 | -1.419 |
06 | -3.323 | 1.27 | -3.571 | -0.977 |
07 | -1.112 | -2.817 | 1.27 | -2.959 |
08 | -1.02 | -1.161 | -3.901 | 1.196 |
09 | -3.901 | -4.398 | 1.351 | -2.232 |
10 | -1.326 | 0.128 | 0.754 | -0.752 |
11 | -0.133 | -0.719 | 0.482 | 0.018 |
12 | -0.248 | 0.487 | 0.265 | -1.24 |