Transcription factor | Mycn | ||||||||
Model | MYCN_MOUSE.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 8 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | SCRCGTGK | ||||||||
Best auROC (human) | 0.897 | ||||||||
Best auROC (mouse) | 0.928 | ||||||||
Peak sets in benchmark (human) | 32 | ||||||||
Peak sets in benchmark (mouse) | 10 | ||||||||
Aligned words | 508 | ||||||||
TF family | bHLH-ZIP factors {1.2.6} | ||||||||
TF subfamily | Myc / Max factors {1.2.6.5} | ||||||||
MGI | MGI:97357 | ||||||||
EntrezGene | GeneID:18109 (SSTAR profile) | ||||||||
UniProt ID | MYCN_MOUSE | ||||||||
UniProt AC | P03966 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Mycn expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 6.0 | 243.0 | 168.0 | 83.0 |
02 | 40.0 | 443.0 | 10.0 | 7.0 |
03 | 297.0 | 6.0 | 139.0 | 58.0 |
04 | 1.0 | 490.0 | 5.0 | 4.0 |
05 | 69.0 | 11.0 | 412.0 | 8.0 |
06 | 1.0 | 0.0 | 1.0 | 498.0 |
07 | 1.0 | 1.0 | 496.0 | 2.0 |
08 | 21.0 | 62.0 | 323.0 | 94.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -2.819 | 0.659 | 0.293 | -0.403 |
02 | -1.114 | 1.256 | -2.394 | -2.694 |
03 | 0.858 | -2.819 | 0.105 | -0.754 |
04 | -3.903 | 1.357 | -2.961 | -3.126 |
05 | -0.584 | -2.311 | 1.184 | -2.584 |
06 | -3.903 | -4.4 | -3.903 | 1.373 |
07 | -3.903 | -3.903 | 1.369 | -3.573 |
08 | -1.725 | -0.689 | 0.942 | -0.281 |