Model info
| Transcription factor | Myf5 | ||||||||
| Model | MYF5_MOUSE.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bCASCTGTYnh | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.787 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 2 | ||||||||
| Aligned words | 449 | ||||||||
| TF family | MyoD / ASC-related factors {1.2.2} | ||||||||
| TF subfamily | Myogenic transcription factors {1.2.2.1} | ||||||||
| MGI | MGI:97252 | ||||||||
| EntrezGene | GeneID:17877 (SSTAR profile) | ||||||||
| UniProt ID | MYF5_MOUSE | ||||||||
| UniProt AC | P24699 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Myf5 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 71.0 | 133.0 | 168.0 | 76.0 |
| 02 | 6.0 | 424.0 | 7.0 | 11.0 |
| 03 | 438.0 | 1.0 | 2.0 | 7.0 |
| 04 | 11.0 | 113.0 | 303.0 | 21.0 |
| 05 | 6.0 | 412.0 | 4.0 | 26.0 |
| 06 | 7.0 | 5.0 | 0.0 | 436.0 |
| 07 | 4.0 | 19.0 | 366.0 | 59.0 |
| 08 | 1.0 | 76.0 | 10.0 | 361.0 |
| 09 | 1.0 | 144.0 | 36.0 | 267.0 |
| 10 | 98.0 | 164.0 | 67.0 | 119.0 |
| 11 | 80.0 | 178.0 | 50.0 | 140.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.448 | 0.17 | 0.401 | -0.381 |
| 02 | -2.714 | 1.321 | -2.589 | -2.204 |
| 03 | 1.354 | -3.805 | -3.472 | -2.589 |
| 04 | -2.204 | 0.009 | 0.987 | -1.617 |
| 05 | -2.714 | 1.293 | -3.023 | -1.417 |
| 06 | -2.589 | -2.856 | -4.309 | 1.349 |
| 07 | -3.023 | -1.71 | 1.175 | -0.629 |
| 08 | -3.805 | -0.381 | -2.287 | 1.161 |
| 09 | -3.805 | 0.248 | -1.107 | 0.861 |
| 10 | -0.132 | 0.377 | -0.505 | 0.06 |
| 11 | -0.331 | 0.458 | -0.79 | 0.22 |