Model info
| Transcription factor | Myf6 | ||||||||
| Model | MYF6_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 7 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | CAGCTGC | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 9 | ||||||||
| TF family | MyoD / ASC-related factors {1.2.2} | ||||||||
| TF subfamily | Myogenic transcription factors {1.2.2.1} | ||||||||
| MGI | MGI:97253 | ||||||||
| EntrezGene | GeneID:17878 (SSTAR profile) | ||||||||
| UniProt ID | MYF6_MOUSE | ||||||||
| UniProt AC | P15375 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Myf6 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.0 | 7.0 | 0.0 | 0.0 |
| 02 | 7.0 | 0.0 | 0.0 | 0.0 |
| 03 | 0.0 | 3.048 | 3.952 | 0.0 |
| 04 | 0.0 | 7.0 | 0.0 | 0.0 |
| 05 | 0.0 | 0.0 | 0.0 | 7.0 |
| 06 | 0.0 | 0.0 | 7.0 | 0.0 |
| 07 | 0.226 | 5.306 | 0.226 | 1.242 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.525 | 1.208 | -1.525 | -1.525 |
| 02 | 1.208 | -1.525 | -1.525 | -1.525 |
| 03 | -1.525 | 0.458 | 0.685 | -1.525 |
| 04 | -1.525 | 1.208 | -1.525 | -1.525 |
| 05 | -1.525 | -1.525 | -1.525 | 1.208 |
| 06 | -1.525 | -1.525 | 1.208 | -1.525 |
| 07 | -1.144 | 0.952 | -1.144 | -0.258 |