We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMYOD1
(GeneCards)
ModelMYOD1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length18
Quality
A
Motif rank
0
ConsensusvCASCTGYYnbbbbbnnb
Best auROC (human)0.995
Best auROC (mouse)0.997
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)63
Aligned words437
TF familyMyoD / ASC-related factors {1.2.2}
TF subfamilyMyogenic transcription factors {1.2.2.1}
HGNCHGNC:7611
EntrezGeneGeneID:4654
(SSTAR profile)
UniProt IDMYOD1_HUMAN
UniProt ACP15172
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.57226
0.0005 8.87781
0.0001 14.00106
GTEx tissue expression atlas MYOD1 expression
ReMap ChIP-seq dataset list MYOD1 datasets
Motifs in JASPAR
MA0499.1 (Myod1; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
011.0122.00.00.01.0112.00.01.00.0161.01.01.01.036.00.00.0
023.00.00.00.0415.02.03.011.01.00.00.00.00.00.02.00.0
030.0137.0268.014.00.02.00.00.00.04.01.00.00.03.08.00.0
040.00.00.00.00.0144.00.02.02.0269.03.03.00.014.00.00.0
050.00.00.02.04.02.00.0421.00.00.00.03.00.00.00.05.0
060.00.04.00.00.00.01.01.00.00.00.00.00.00.0428.03.0
070.00.00.00.00.00.00.00.04.0166.017.0246.00.00.02.02.0
081.01.01.01.011.049.01.0105.00.08.03.08.03.0134.029.082.0
093.05.05.02.076.044.029.043.08.017.06.03.016.061.098.021.0
1015.044.025.019.017.061.06.043.06.090.010.032.012.030.018.09.0
117.013.019.011.035.058.09.0123.09.021.016.013.010.025.045.023.0
126.04.045.06.032.028.015.042.015.031.033.010.06.022.0126.016.0
132.017.034.06.019.037.03.026.05.0105.041.068.03.023.045.03.0
142.06.018.03.037.076.06.063.08.057.041.017.02.072.020.09.0
1511.012.013.013.074.053.013.071.021.026.028.010.04.034.028.026.0
1635.022.028.025.049.023.015.038.021.028.017.016.021.018.061.020.0
1712.016.030.068.012.025.05.049.013.018.08.082.03.033.018.045.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-2.9991.486-4.289-4.289-2.9991.401-4.289-2.999-4.2891.763-2.999-2.999-2.9990.273-4.289-4.289
02-2.103-4.289-4.289-4.2892.708-2.454-2.103-0.889-2.999-4.289-4.289-4.289-4.289-4.289-2.454-4.289
03-4.2891.6022.271-0.655-4.289-2.454-4.289-4.289-4.289-1.844-2.999-4.289-4.289-2.103-1.195-4.289
04-4.289-4.289-4.289-4.289-4.2891.651-4.289-2.454-2.4542.275-2.103-2.103-4.289-0.655-4.289-4.289
05-4.289-4.289-4.289-2.454-1.844-2.454-4.2892.722-4.289-4.289-4.289-2.103-4.289-4.289-4.289-1.638
06-4.289-4.289-1.844-4.289-4.289-4.289-2.999-2.999-4.289-4.289-4.289-4.289-4.289-4.2892.739-2.103
07-4.289-4.289-4.289-4.289-4.289-4.289-4.289-4.289-1.8441.793-0.4662.186-4.289-4.289-2.454-2.454
08-2.999-2.999-2.999-2.999-0.8890.578-2.9991.336-4.289-1.195-2.103-1.195-2.1031.580.0591.09
09-2.103-1.638-1.638-2.4541.0150.4720.0590.449-1.195-0.466-1.468-2.103-0.5250.7961.268-0.259
10-0.5880.472-0.087-0.357-0.4660.796-1.4680.449-1.4681.183-0.9810.156-0.8050.093-0.41-1.083
11-1.322-0.727-0.357-0.8890.2450.746-1.0831.494-1.083-0.259-0.525-0.727-0.981-0.0870.494-0.169
12-1.468-1.8440.494-1.4680.1560.025-0.5880.426-0.5880.1250.187-0.981-1.468-0.2131.518-0.525
13-2.454-0.4660.216-1.468-0.3570.3-2.103-0.049-1.6381.3360.4020.904-2.103-0.1690.494-2.103
14-2.454-1.468-0.41-2.1030.31.015-1.4680.828-1.1950.7290.402-0.466-2.4540.961-0.307-1.083
15-0.889-0.805-0.727-0.7270.9880.656-0.7270.947-0.259-0.0490.025-0.981-1.8440.2160.025-0.049
160.245-0.2130.025-0.0870.578-0.169-0.5880.326-0.2590.025-0.466-0.525-0.259-0.410.796-0.307
17-0.805-0.5250.0930.904-0.805-0.087-1.6380.578-0.727-0.41-1.1951.09-2.1030.187-0.410.494