We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMYOD1
(GeneCards)
ModelMYOD1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusvCAGCTGYYnYbbbh
Best auROC (human)0.99
Best auROC (mouse)0.992
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)63
Aligned words500
TF familyMyoD / ASC-related factors {1.2.2}
TF subfamilyMyogenic transcription factors {1.2.2.1}
HGNCHGNC:7611
EntrezGeneGeneID:4654
(SSTAR profile)
UniProt IDMYOD1_HUMAN
UniProt ACP15172
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.29441
0.0005 4.47406
0.0001 7.1033100000000005
GTEx tissue expression atlas MYOD1 expression
ReMap ChIP-seq dataset list MYOD1 datasets
Motifs in JASPAR
PCM
ACGT
01110.0119.0204.067.0
023.0496.01.00.0
03497.00.00.03.0
044.0114.0375.07.0
055.0490.00.05.0
061.02.00.0497.0
070.02.0497.01.0
080.0196.019.0285.0
096.0210.030.0254.0
1083.0167.0146.0104.0
1133.0287.054.0126.0
1272.0117.085.0226.0
1365.080.0248.0107.0
1424.0198.0111.0167.0
1577.0257.066.0100.0
PWM
ACGT
01-0.126-0.0490.485-0.613
02-3.3251.369-3.903-4.4
031.371-4.4-4.4-3.325
04-3.126-0.0911.09-2.694
05-2.9611.357-4.4-2.961
06-3.903-3.573-4.41.371
07-4.4-3.5731.371-3.903
08-4.40.445-1.8180.817
09-2.8190.514-1.3890.703
10-0.4030.2870.154-0.181
11-1.2980.824-0.8230.008
12-0.543-0.065-0.380.587
13-0.643-0.4390.679-0.153
14-1.60.455-0.1170.287
15-0.4770.714-0.628-0.22