Transcription factor | MYOD1 (GeneCards) | ||||||||
Model | MYOD1_HUMAN.H11MO.1.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 11 | ||||||||
Quality | A | ||||||||
Motif rank | 1 | ||||||||
Consensus | bnbCAGCTGTY | ||||||||
Best auROC (human) | 0.984 | ||||||||
Best auROC (mouse) | 0.988 | ||||||||
Peak sets in benchmark (human) | 9 | ||||||||
Peak sets in benchmark (mouse) | 63 | ||||||||
Aligned words | 500 | ||||||||
TF family | MyoD / ASC-related factors {1.2.2} | ||||||||
TF subfamily | Myogenic transcription factors {1.2.2.1} | ||||||||
HGNC | HGNC:7611 | ||||||||
EntrezGene | GeneID:4654 (SSTAR profile) | ||||||||
UniProt ID | MYOD1_HUMAN | ||||||||
UniProt AC | P15172 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | MYOD1 expression | ||||||||
ReMap ChIP-seq dataset list | MYOD1 datasets | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 46.0 | 254.0 | 96.0 | 104.0 |
02 | 137.0 | 116.0 | 75.0 | 172.0 |
03 | 44.0 | 105.0 | 293.0 | 58.0 |
04 | 1.0 | 491.0 | 6.0 | 2.0 |
05 | 488.0 | 3.0 | 1.0 | 8.0 |
06 | 4.0 | 68.0 | 415.0 | 13.0 |
07 | 4.0 | 492.0 | 3.0 | 1.0 |
08 | 0.0 | 0.0 | 0.0 | 500.0 |
09 | 0.0 | 5.0 | 494.0 | 1.0 |
10 | 1.0 | 141.0 | 6.0 | 352.0 |
11 | 0.0 | 248.0 | 42.0 | 210.0 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.979 | 0.703 | -0.26 | -0.181 |
02 | 0.091 | -0.074 | -0.503 | 0.316 |
03 | -1.022 | -0.172 | 0.845 | -0.754 |
04 | -3.903 | 1.359 | -2.819 | -3.573 |
05 | 1.353 | -3.325 | -3.903 | -2.584 |
06 | -3.126 | -0.599 | 1.191 | -2.163 |
07 | -3.126 | 1.361 | -3.325 | -3.903 |
08 | -4.4 | -4.4 | -4.4 | 1.377 |
09 | -4.4 | -2.961 | 1.365 | -3.903 |
10 | -3.903 | 0.119 | -2.819 | 1.027 |
11 | -4.4 | 0.679 | -1.067 | 0.514 |