We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMYOD1
(GeneCards)
ModelMYOD1_HUMAN.H11MO.1.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length11
Quality
A
Motif rank
1
ConsensusbnbCAGCTGTY
Best auROC (human)0.984
Best auROC (mouse)0.988
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)63
Aligned words500
TF familyMyoD / ASC-related factors {1.2.2}
TF subfamilyMyogenic transcription factors {1.2.2.1}
HGNCHGNC:7611
EntrezGeneGeneID:4654
(SSTAR profile)
UniProt IDMYOD1_HUMAN
UniProt ACP15172
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.66962
0.0005 4.738245
0.0001 7.375970000000001
GTEx tissue expression atlas MYOD1 expression
ReMap ChIP-seq dataset list MYOD1 datasets
Motifs in JASPAR
PCM
ACGT
0146.0254.096.0104.0
02137.0116.075.0172.0
0344.0105.0293.058.0
041.0491.06.02.0
05488.03.01.08.0
064.068.0415.013.0
074.0492.03.01.0
080.00.00.0500.0
090.05.0494.01.0
101.0141.06.0352.0
110.0248.042.0210.0
PWM
ACGT
01-0.9790.703-0.26-0.181
020.091-0.074-0.5030.316
03-1.022-0.1720.845-0.754
04-3.9031.359-2.819-3.573
051.353-3.325-3.903-2.584
06-3.126-0.5991.191-2.163
07-3.1261.361-3.325-3.903
08-4.4-4.4-4.41.377
09-4.4-2.9611.365-3.903
10-3.9030.119-2.8191.027
11-4.40.679-1.0670.514