We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorMyod1
ModelMYOD1_MOUSE.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv10
Model length23
Quality
A
Motif rank
0
ConsensusnnnvCAGCTGYYbbhbbbnnbbn
Best auROC (human)0.993
Best auROC (mouse)0.998
Peak sets in benchmark (human)9
Peak sets in benchmark (mouse)63
Aligned words500
TF familyMyoD / ASC-related factors {1.2.2}
TF subfamilyMyogenic transcription factors {1.2.2.1}
MGIMGI:97275
EntrezGeneGeneID:17927
(SSTAR profile)
UniProt IDMYOD1_MOUSE
UniProt ACP10085
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.10021
0.0005 6.774660000000001
0.0001 12.82076
GTEx tissue expression atlas Myod1 expression
Motifs in JASPAR
MA0499.1 (Myod1; Mus musculus)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0114.38834.85841.40915.56243.36251.96911.07745.11820.09848.3543.47417.4358.73341.80949.09713.261
0213.52413.10344.08115.87249.74528.03511.39587.81132.86739.35351.04621.7925.95923.43649.09712.884
0313.9120.28664.952.95133.77434.48911.29424.3724.48752.01969.9739.144.83827.172100.8175.531
040.077.0090.00.00.0133.9660.00.00.92245.0111.1020.00.041.9910.00.0
050.920.00.00.0492.9260.9391.0123.0991.1020.00.00.00.00.00.00.0
061.14499.903385.0398.8630.00.9390.00.00.00.01.0120.00.00.03.0990.0
070.01.1440.00.00.91298.9030.01.0270.0388.2460.00.9040.08.8630.00.0
080.00.00.00.9120.00.980.0496.1760.00.00.00.00.00.00.01.932
090.00.00.00.00.00.00.980.00.00.00.00.00.03.704495.3160.0
100.00.00.00.00.03.7040.00.02.049214.63619.313260.2980.00.00.00.0
110.00.9381.1110.02.00467.5843.887144.8650.010.361.167.7930.0149.88325.02285.393
120.02.0040.00.052.125101.2916.61658.7340.93121.0619.1880.011.76584.4120.59421.293
134.8934.99617.8587.0779.83123.60113.03162.29214.11469.39832.51730.372.93946.9759.81220.301
143.13810.82913.014.79556.81776.5721.994139.58711.53228.90719.17113.6088.89548.89337.2624.991
157.23415.82148.5968.73147.20364.36714.03139.6018.65725.52629.3237.9292.78227.535134.2618.404
163.9215.91931.96414.07335.75550.7129.61437.16821.708111.69334.75458.0561.04529.57232.43411.613
172.96520.79730.6747.99217.021121.2627.46762.1457.75462.11326.46512.4362.84181.43628.6278.007
187.1017.88111.7573.84299.77289.8239.19986.8137.64336.05336.43913.0995.24745.1827.74112.411
1917.74343.79248.18210.04560.62855.16411.25851.88614.85533.46221.04615.7748.97429.52263.12314.546
2010.66914.70326.3650.46828.61938.6467.78586.8919.51143.02623.47257.6018.67515.03836.49232.045
218.46620.22928.13810.6426.01637.1135.91842.36711.78929.84228.20824.277.939140.61447.70130.75
226.02715.85923.5338.791102.93149.19512.66163.0117.40236.98441.07414.5048.56841.92939.05918.471
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.7610.1080.278-0.6850.3240.504-1.0150.363-0.4350.4320.327-0.574-1.2440.2880.447-0.841
02-0.822-0.8520.34-0.6660.46-0.107-0.9881.0250.050.2280.486-0.355-1.606-0.2840.447-0.869
03-0.794-0.4250.725-2.2490.0770.097-0.996-0.245-0.240.5050.799-1.2-1.801-0.1381.163-1.676
04-4.40.895-4.4-4.4-4.41.446-4.4-4.4-3.1852.049-3.055-4.4-4.40.292-4.4-4.4
05-3.185-4.4-4.4-4.42.747-3.171-3.118-2.205-3.055-4.4-4.4-4.4-4.4-4.4-4.4-4.4
06-3.0271.1542.5-1.23-4.4-3.171-4.4-4.4-4.4-4.4-3.118-4.4-4.4-4.4-2.205-4.4
07-4.4-3.027-4.4-4.4-3.1921.144-4.4-3.107-4.42.508-4.4-3.198-4.4-1.23-4.4-4.4
08-4.4-4.4-4.4-3.192-4.4-3.141-4.42.753-4.4-4.4-4.4-4.4-4.4-4.4-4.4-2.613
09-4.4-4.4-4.4-4.4-4.4-4.4-3.141-4.4-4.4-4.4-4.4-4.4-4.4-2.0452.752-4.4
10-4.4-4.4-4.4-4.4-4.4-2.045-4.4-4.4-2.5631.916-0.4742.109-4.4-4.4-4.4-4.4
11-4.4-3.172-3.049-4.4-2.5820.765-2.0011.524-4.4-1.08-3.017-1.352-4.41.558-0.2190.997
12-4.4-2.582-4.4-4.40.5071.167-0.6210.625-3.177-0.389-1.195-4.4-0.9570.9861.341-0.378
13-1.7910.112-0.55-1.444-1.131.366-0.8580.684-0.780.7910.039-0.028-2.2520.403-1.132-0.425
14-2.194-1.037-0.859-1.8090.5920.889-2.5861.487-0.976-0.077-0.481-0.816-1.2260.4430.174-0.22
15-1.423-0.6690.437-1.2440.4080.716-0.7860.234-1.252-0.2-0.063-1.336-2.3-0.1251.448-0.521
16-1.994-0.6630.022-0.7830.1330.479-1.1520.171-0.3591.2650.1050.614-3.094-0.0550.037-0.969
17-2.244-0.401-0.018-1.329-0.5971.347-1.3930.681-1.3570.681-0.164-0.903-2.2820.95-0.087-1.327
18-1.441-1.342-0.957-2.0121.1521.048-1.1941.014-1.3710.1410.152-0.853-1.7250.365-0.118-0.905
19-0.5570.3340.429-1.1090.6570.563-0.9990.502-0.730.068-0.389-0.672-1.218-0.0560.697-0.751
20-1.051-0.74-0.1680.475-0.0870.21-1.3541.015-0.4640.316-0.2820.606-1.25-0.7180.1530.025
21-1.273-0.428-0.104-1.054-0.1810.17-1.6130.301-0.955-0.046-0.101-0.249-1.3351.4940.419-0.016
22-1.596-0.666-0.28-1.2371.1830.449-0.8860.695-0.5760.1670.27-0.753-1.2620.2910.221-0.517