Model info
| Transcription factor | Myod1 | ||||||||
| Model | MYOD1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | vCASCTGYYnYhvbb | ||||||||
| Best auROC (human) | 0.985 | ||||||||
| Best auROC (mouse) | 0.994 | ||||||||
| Peak sets in benchmark (human) | 9 | ||||||||
| Peak sets in benchmark (mouse) | 63 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | MyoD / ASC-related factors {1.2.2} | ||||||||
| TF subfamily | Myogenic transcription factors {1.2.2.1} | ||||||||
| MGI | MGI:97275 | ||||||||
| EntrezGene | GeneID:17927 (SSTAR profile) | ||||||||
| UniProt ID | MYOD1_MOUSE | ||||||||
| UniProt AC | P10085 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Myod1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 118.0 | 119.0 | 206.0 | 57.0 |
| 02 | 1.0 | 499.0 | 0.0 | 0.0 |
| 03 | 499.0 | 1.0 | 0.0 | 0.0 |
| 04 | 2.0 | 150.0 | 331.0 | 17.0 |
| 05 | 4.0 | 489.0 | 4.0 | 3.0 |
| 06 | 1.0 | 0.0 | 0.0 | 499.0 |
| 07 | 0.0 | 0.0 | 500.0 | 0.0 |
| 08 | 1.0 | 145.0 | 25.0 | 329.0 |
| 09 | 3.0 | 224.0 | 34.0 | 239.0 |
| 10 | 85.0 | 183.0 | 118.0 | 114.0 |
| 11 | 38.0 | 300.0 | 50.0 | 112.0 |
| 12 | 57.0 | 150.0 | 48.0 | 245.0 |
| 13 | 90.0 | 111.0 | 212.0 | 87.0 |
| 14 | 58.0 | 165.0 | 87.0 | 190.0 |
| 15 | 66.0 | 258.0 | 77.0 | 99.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.057 | -0.049 | 0.495 | -0.771 |
| 02 | -3.903 | 1.375 | -4.4 | -4.4 |
| 03 | 1.375 | -3.903 | -4.4 | -4.4 |
| 04 | -3.573 | 0.18 | 0.966 | -1.92 |
| 05 | -3.126 | 1.355 | -3.126 | -3.325 |
| 06 | -3.903 | -4.4 | -4.4 | 1.375 |
| 07 | -4.4 | -4.4 | 1.377 | -4.4 |
| 08 | -3.903 | 0.147 | -1.561 | 0.96 |
| 09 | -3.325 | 0.578 | -1.27 | 0.642 |
| 10 | -0.38 | 0.377 | -0.057 | -0.091 |
| 11 | -1.163 | 0.868 | -0.898 | -0.108 |
| 12 | -0.771 | 0.18 | -0.938 | 0.667 |
| 13 | -0.324 | -0.117 | 0.523 | -0.357 |
| 14 | -0.754 | 0.275 | -0.357 | 0.415 |
| 15 | -0.628 | 0.718 | -0.477 | -0.23 |