Model info
| Transcription factor | Myod1 | ||||||||
| Model | MYOD1_MOUSE.H11MO.1.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 11 | ||||||||
| Quality | A | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | vCAGCTGTYvY | ||||||||
| Best auROC (human) | 0.982 | ||||||||
| Best auROC (mouse) | 0.992 | ||||||||
| Peak sets in benchmark (human) | 9 | ||||||||
| Peak sets in benchmark (mouse) | 63 | ||||||||
| Aligned words | 501 | ||||||||
| TF family | MyoD / ASC-related factors {1.2.2} | ||||||||
| TF subfamily | Myogenic transcription factors {1.2.2.1} | ||||||||
| MGI | MGI:97275 | ||||||||
| EntrezGene | GeneID:17927 (SSTAR profile) | ||||||||
| UniProt ID | MYOD1_MOUSE | ||||||||
| UniProt AC | P10085 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Myod1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 73.0 | 139.0 | 234.0 | 54.0 |
| 02 | 1.0 | 499.0 | 0.0 | 0.0 |
| 03 | 496.0 | 1.0 | 2.0 | 1.0 |
| 04 | 0.0 | 76.0 | 420.0 | 4.0 |
| 05 | 0.0 | 498.0 | 2.0 | 0.0 |
| 06 | 2.0 | 0.0 | 0.0 | 498.0 |
| 07 | 0.0 | 0.0 | 500.0 | 0.0 |
| 08 | 0.0 | 193.0 | 2.0 | 305.0 |
| 09 | 3.0 | 223.0 | 27.0 | 247.0 |
| 10 | 76.0 | 209.0 | 154.0 | 61.0 |
| 11 | 34.0 | 286.0 | 60.0 | 120.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.529 | 0.105 | 0.621 | -0.823 |
| 02 | -3.903 | 1.375 | -4.4 | -4.4 |
| 03 | 1.369 | -3.903 | -3.573 | -3.903 |
| 04 | -4.4 | -0.49 | 1.203 | -3.126 |
| 05 | -4.4 | 1.373 | -3.573 | -4.4 |
| 06 | -3.573 | -4.4 | -4.4 | 1.373 |
| 07 | -4.4 | -4.4 | 1.377 | -4.4 |
| 08 | -4.4 | 0.43 | -3.573 | 0.885 |
| 09 | -3.325 | 0.573 | -1.489 | 0.675 |
| 10 | -0.49 | 0.509 | 0.206 | -0.705 |
| 11 | -1.27 | 0.821 | -0.721 | -0.04 |