Model info
| Transcription factor | MYOG (GeneCards) | ||||||||
| Model | MYOG_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 13 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bhvCAGCTGYYhb | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.994 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 20 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | MyoD / ASC-related factors {1.2.2} | ||||||||
| TF subfamily | Myogenic transcription factors {1.2.2.1} | ||||||||
| HGNC | HGNC:7612 | ||||||||
| EntrezGene | GeneID:4656 (SSTAR profile) | ||||||||
| UniProt ID | MYOG_HUMAN | ||||||||
| UniProt AC | P15173 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | MYOG expression | ||||||||
| ReMap ChIP-seq dataset list | MYOG datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 36.0 | 247.0 | 103.0 | 114.0 |
| 02 | 152.0 | 178.0 | 49.0 | 121.0 |
| 03 | 108.0 | 132.0 | 223.0 | 37.0 |
| 04 | 2.0 | 496.0 | 2.0 | 0.0 |
| 05 | 492.0 | 0.0 | 3.0 | 5.0 |
| 06 | 2.0 | 57.0 | 438.0 | 3.0 |
| 07 | 5.0 | 485.0 | 4.0 | 6.0 |
| 08 | 1.0 | 0.0 | 2.0 | 497.0 |
| 09 | 1.0 | 0.0 | 499.0 | 0.0 |
| 10 | 2.0 | 199.0 | 23.0 | 276.0 |
| 11 | 2.0 | 287.0 | 24.0 | 187.0 |
| 12 | 94.0 | 215.0 | 80.0 | 111.0 |
| 13 | 57.0 | 190.0 | 97.0 | 156.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -1.215 | 0.675 | -0.191 | -0.091 |
| 02 | 0.193 | 0.35 | -0.918 | -0.032 |
| 03 | -0.144 | 0.054 | 0.573 | -1.189 |
| 04 | -3.573 | 1.369 | -3.573 | -4.4 |
| 05 | 1.361 | -4.4 | -3.325 | -2.961 |
| 06 | -3.573 | -0.771 | 1.245 | -3.325 |
| 07 | -2.961 | 1.347 | -3.126 | -2.819 |
| 08 | -3.903 | -4.4 | -3.573 | 1.371 |
| 09 | -3.903 | -4.4 | 1.375 | -4.4 |
| 10 | -3.573 | 0.46 | -1.64 | 0.785 |
| 11 | -3.573 | 0.824 | -1.6 | 0.399 |
| 12 | -0.281 | 0.537 | -0.439 | -0.117 |
| 13 | -0.771 | 0.415 | -0.25 | 0.219 |