We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNANOG
(GeneCards)
ModelNANOG_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length19
Quality
A
Motif rank
0
ConsensusnbbYWTTSWnWTKYWRWbn
Best auROC (human)0.939
Best auROC (mouse)0.943
Peak sets in benchmark (human)15
Peak sets in benchmark (mouse)38
Aligned words497
TF familyNK-related factors {3.1.2}
TF subfamilyNANOG {3.1.2.12}
HGNCHGNC:20857
EntrezGeneGeneID:79923
(SSTAR profile)
UniProt IDNANOG_HUMAN
UniProt ACQ9H9S0
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 11.50901
0.0005 13.16511
0.0001 16.598660000000002
GTEx tissue expression atlas NANOG expression
ReMap ChIP-seq dataset list NANOG datasets
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0112.019.052.023.016.028.013.022.020.032.058.040.02.044.052.064.0
022.026.011.011.014.065.05.039.011.0100.029.035.07.068.027.047.0
032.022.02.08.027.0148.01.083.04.043.06.019.011.092.021.08.0
0422.03.01.018.0103.012.06.0184.017.01.00.012.025.08.05.080.0
050.06.07.0154.00.01.05.018.00.05.01.06.01.017.012.0264.0
061.00.00.00.05.00.01.023.02.01.00.022.020.00.06.0416.0
073.08.015.02.00.00.01.00.01.00.04.02.047.0126.0270.018.0
0822.02.00.027.081.04.01.048.067.02.012.0209.09.02.03.08.0
0954.020.048.057.02.00.01.07.06.04.02.04.034.073.064.0121.0
1074.02.013.07.072.07.01.017.069.010.013.023.0110.031.017.031.0
1121.09.017.0278.07.05.01.037.03.02.00.039.04.06.010.058.0
125.01.022.07.04.04.08.06.05.01.014.08.03.010.0315.084.0
131.013.02.01.01.09.01.05.06.0205.056.092.04.058.06.037.0
143.02.00.07.0161.019.05.0100.037.08.010.010.087.03.011.034.0
15170.019.078.021.013.01.09.09.010.04.04.08.098.06.033.014.0
16219.015.019.038.017.03.02.08.088.019.013.04.019.012.08.013.0
1752.040.057.0194.06.015.03.025.06.012.03.021.02.07.024.030.0
1817.05.022.022.029.022.03.020.09.025.017.036.049.032.0113.076.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.932-0.4840.51-0.296-0.652-0.102-0.854-0.34-0.4330.0290.6190.25-2.5780.3450.510.717
02-2.578-0.176-1.016-1.016-0.7820.732-1.7640.225-1.0161.161-0.0680.118-1.4490.777-0.1380.41
03-2.578-0.34-2.578-1.322-0.1381.551-3.1210.975-1.970.322-1.594-0.484-1.0161.078-0.386-1.322
04-0.34-2.228-3.121-0.5371.19-0.932-1.5941.769-0.593-3.121-4.395-0.932-0.214-1.322-1.7640.938
05-4.395-1.594-1.4491.591-4.395-3.121-1.764-0.537-4.395-1.764-3.121-1.594-3.121-0.593-0.9322.129
06-3.121-4.395-4.395-4.395-1.764-4.395-3.121-0.296-2.578-3.121-4.395-0.34-0.433-4.395-1.5942.583
07-2.228-1.322-0.715-2.578-4.395-4.395-3.121-4.395-3.121-4.395-1.97-2.5780.411.3912.151-0.537
08-0.34-2.578-4.395-0.1380.951-1.97-3.1210.4310.762-2.578-0.9321.896-1.209-2.578-2.228-1.322
090.548-0.4330.4310.601-2.578-4.395-3.121-1.449-1.594-1.97-2.578-1.970.0890.8470.7171.351
100.861-2.578-0.854-1.4490.834-1.449-3.121-0.5930.791-1.108-0.854-0.2961.256-0.002-0.593-0.002
11-0.386-1.209-0.5932.181-1.449-1.764-3.1210.173-2.228-2.578-4.3950.225-1.97-1.594-1.1080.619
12-1.764-3.121-0.34-1.449-1.97-1.97-1.322-1.594-1.764-3.121-0.782-1.322-2.228-1.1082.3050.987
13-3.121-0.854-2.578-3.121-3.121-1.209-3.121-1.764-1.5941.8760.5841.078-1.970.619-1.5940.173
14-2.228-2.578-4.395-1.4491.635-0.484-1.7641.1610.173-1.322-1.108-1.1081.022-2.228-1.0160.089
151.69-0.4840.913-0.386-0.854-3.121-1.209-1.209-1.108-1.97-1.97-1.3221.141-1.5940.06-0.782
161.942-0.715-0.4840.199-0.593-2.228-2.578-1.3221.033-0.484-0.854-1.97-0.484-0.932-1.322-0.854
170.510.250.6011.821-1.594-0.715-2.228-0.214-1.594-0.932-2.228-0.386-2.578-1.449-0.254-0.034
18-0.593-1.764-0.34-0.34-0.068-0.34-2.228-0.433-1.209-0.214-0.5930.1460.4510.0291.2820.887