Transcription factor | NANOG (GeneCards) | ||||||||
Model | NANOG_HUMAN.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 19 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nbbYWTTSWnWTKYWRWbn | ||||||||
Best auROC (human) | 0.939 | ||||||||
Best auROC (mouse) | 0.943 | ||||||||
Peak sets in benchmark (human) | 15 | ||||||||
Peak sets in benchmark (mouse) | 38 | ||||||||
Aligned words | 497 | ||||||||
TF family | NK-related factors {3.1.2} | ||||||||
TF subfamily | NANOG {3.1.2.12} | ||||||||
HGNC | HGNC:20857 | ||||||||
EntrezGene | GeneID:79923 (SSTAR profile) | ||||||||
UniProt ID | NANOG_HUMAN | ||||||||
UniProt AC | Q9H9S0 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | NANOG expression | ||||||||
ReMap ChIP-seq dataset list | NANOG datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 12.0 | 19.0 | 52.0 | 23.0 | 16.0 | 28.0 | 13.0 | 22.0 | 20.0 | 32.0 | 58.0 | 40.0 | 2.0 | 44.0 | 52.0 | 64.0 |
02 | 2.0 | 26.0 | 11.0 | 11.0 | 14.0 | 65.0 | 5.0 | 39.0 | 11.0 | 100.0 | 29.0 | 35.0 | 7.0 | 68.0 | 27.0 | 47.0 |
03 | 2.0 | 22.0 | 2.0 | 8.0 | 27.0 | 148.0 | 1.0 | 83.0 | 4.0 | 43.0 | 6.0 | 19.0 | 11.0 | 92.0 | 21.0 | 8.0 |
04 | 22.0 | 3.0 | 1.0 | 18.0 | 103.0 | 12.0 | 6.0 | 184.0 | 17.0 | 1.0 | 0.0 | 12.0 | 25.0 | 8.0 | 5.0 | 80.0 |
05 | 0.0 | 6.0 | 7.0 | 154.0 | 0.0 | 1.0 | 5.0 | 18.0 | 0.0 | 5.0 | 1.0 | 6.0 | 1.0 | 17.0 | 12.0 | 264.0 |
06 | 1.0 | 0.0 | 0.0 | 0.0 | 5.0 | 0.0 | 1.0 | 23.0 | 2.0 | 1.0 | 0.0 | 22.0 | 20.0 | 0.0 | 6.0 | 416.0 |
07 | 3.0 | 8.0 | 15.0 | 2.0 | 0.0 | 0.0 | 1.0 | 0.0 | 1.0 | 0.0 | 4.0 | 2.0 | 47.0 | 126.0 | 270.0 | 18.0 |
08 | 22.0 | 2.0 | 0.0 | 27.0 | 81.0 | 4.0 | 1.0 | 48.0 | 67.0 | 2.0 | 12.0 | 209.0 | 9.0 | 2.0 | 3.0 | 8.0 |
09 | 54.0 | 20.0 | 48.0 | 57.0 | 2.0 | 0.0 | 1.0 | 7.0 | 6.0 | 4.0 | 2.0 | 4.0 | 34.0 | 73.0 | 64.0 | 121.0 |
10 | 74.0 | 2.0 | 13.0 | 7.0 | 72.0 | 7.0 | 1.0 | 17.0 | 69.0 | 10.0 | 13.0 | 23.0 | 110.0 | 31.0 | 17.0 | 31.0 |
11 | 21.0 | 9.0 | 17.0 | 278.0 | 7.0 | 5.0 | 1.0 | 37.0 | 3.0 | 2.0 | 0.0 | 39.0 | 4.0 | 6.0 | 10.0 | 58.0 |
12 | 5.0 | 1.0 | 22.0 | 7.0 | 4.0 | 4.0 | 8.0 | 6.0 | 5.0 | 1.0 | 14.0 | 8.0 | 3.0 | 10.0 | 315.0 | 84.0 |
13 | 1.0 | 13.0 | 2.0 | 1.0 | 1.0 | 9.0 | 1.0 | 5.0 | 6.0 | 205.0 | 56.0 | 92.0 | 4.0 | 58.0 | 6.0 | 37.0 |
14 | 3.0 | 2.0 | 0.0 | 7.0 | 161.0 | 19.0 | 5.0 | 100.0 | 37.0 | 8.0 | 10.0 | 10.0 | 87.0 | 3.0 | 11.0 | 34.0 |
15 | 170.0 | 19.0 | 78.0 | 21.0 | 13.0 | 1.0 | 9.0 | 9.0 | 10.0 | 4.0 | 4.0 | 8.0 | 98.0 | 6.0 | 33.0 | 14.0 |
16 | 219.0 | 15.0 | 19.0 | 38.0 | 17.0 | 3.0 | 2.0 | 8.0 | 88.0 | 19.0 | 13.0 | 4.0 | 19.0 | 12.0 | 8.0 | 13.0 |
17 | 52.0 | 40.0 | 57.0 | 194.0 | 6.0 | 15.0 | 3.0 | 25.0 | 6.0 | 12.0 | 3.0 | 21.0 | 2.0 | 7.0 | 24.0 | 30.0 |
18 | 17.0 | 5.0 | 22.0 | 22.0 | 29.0 | 22.0 | 3.0 | 20.0 | 9.0 | 25.0 | 17.0 | 36.0 | 49.0 | 32.0 | 113.0 | 76.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.932 | -0.484 | 0.51 | -0.296 | -0.652 | -0.102 | -0.854 | -0.34 | -0.433 | 0.029 | 0.619 | 0.25 | -2.578 | 0.345 | 0.51 | 0.717 |
02 | -2.578 | -0.176 | -1.016 | -1.016 | -0.782 | 0.732 | -1.764 | 0.225 | -1.016 | 1.161 | -0.068 | 0.118 | -1.449 | 0.777 | -0.138 | 0.41 |
03 | -2.578 | -0.34 | -2.578 | -1.322 | -0.138 | 1.551 | -3.121 | 0.975 | -1.97 | 0.322 | -1.594 | -0.484 | -1.016 | 1.078 | -0.386 | -1.322 |
04 | -0.34 | -2.228 | -3.121 | -0.537 | 1.19 | -0.932 | -1.594 | 1.769 | -0.593 | -3.121 | -4.395 | -0.932 | -0.214 | -1.322 | -1.764 | 0.938 |
05 | -4.395 | -1.594 | -1.449 | 1.591 | -4.395 | -3.121 | -1.764 | -0.537 | -4.395 | -1.764 | -3.121 | -1.594 | -3.121 | -0.593 | -0.932 | 2.129 |
06 | -3.121 | -4.395 | -4.395 | -4.395 | -1.764 | -4.395 | -3.121 | -0.296 | -2.578 | -3.121 | -4.395 | -0.34 | -0.433 | -4.395 | -1.594 | 2.583 |
07 | -2.228 | -1.322 | -0.715 | -2.578 | -4.395 | -4.395 | -3.121 | -4.395 | -3.121 | -4.395 | -1.97 | -2.578 | 0.41 | 1.391 | 2.151 | -0.537 |
08 | -0.34 | -2.578 | -4.395 | -0.138 | 0.951 | -1.97 | -3.121 | 0.431 | 0.762 | -2.578 | -0.932 | 1.896 | -1.209 | -2.578 | -2.228 | -1.322 |
09 | 0.548 | -0.433 | 0.431 | 0.601 | -2.578 | -4.395 | -3.121 | -1.449 | -1.594 | -1.97 | -2.578 | -1.97 | 0.089 | 0.847 | 0.717 | 1.351 |
10 | 0.861 | -2.578 | -0.854 | -1.449 | 0.834 | -1.449 | -3.121 | -0.593 | 0.791 | -1.108 | -0.854 | -0.296 | 1.256 | -0.002 | -0.593 | -0.002 |
11 | -0.386 | -1.209 | -0.593 | 2.181 | -1.449 | -1.764 | -3.121 | 0.173 | -2.228 | -2.578 | -4.395 | 0.225 | -1.97 | -1.594 | -1.108 | 0.619 |
12 | -1.764 | -3.121 | -0.34 | -1.449 | -1.97 | -1.97 | -1.322 | -1.594 | -1.764 | -3.121 | -0.782 | -1.322 | -2.228 | -1.108 | 2.305 | 0.987 |
13 | -3.121 | -0.854 | -2.578 | -3.121 | -3.121 | -1.209 | -3.121 | -1.764 | -1.594 | 1.876 | 0.584 | 1.078 | -1.97 | 0.619 | -1.594 | 0.173 |
14 | -2.228 | -2.578 | -4.395 | -1.449 | 1.635 | -0.484 | -1.764 | 1.161 | 0.173 | -1.322 | -1.108 | -1.108 | 1.022 | -2.228 | -1.016 | 0.089 |
15 | 1.69 | -0.484 | 0.913 | -0.386 | -0.854 | -3.121 | -1.209 | -1.209 | -1.108 | -1.97 | -1.97 | -1.322 | 1.141 | -1.594 | 0.06 | -0.782 |
16 | 1.942 | -0.715 | -0.484 | 0.199 | -0.593 | -2.228 | -2.578 | -1.322 | 1.033 | -0.484 | -0.854 | -1.97 | -0.484 | -0.932 | -1.322 | -0.854 |
17 | 0.51 | 0.25 | 0.601 | 1.821 | -1.594 | -0.715 | -2.228 | -0.214 | -1.594 | -0.932 | -2.228 | -0.386 | -2.578 | -1.449 | -0.254 | -0.034 |
18 | -0.593 | -1.764 | -0.34 | -0.34 | -0.068 | -0.34 | -2.228 | -0.433 | -1.209 | -0.214 | -0.593 | 0.146 | 0.451 | 0.029 | 1.282 | 0.887 |