Transcription factor | NEUROD1 (GeneCards) | ||||||||
Model | NDF1_HUMAN.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | ![]() | ||||||||
LOGO (reverse complement) | ![]() | ||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 14 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | nvnRRCAGATGGbn | ||||||||
Best auROC (human) | 0.949 | ||||||||
Best auROC (mouse) | 0.96 | ||||||||
Peak sets in benchmark (human) | 5 | ||||||||
Peak sets in benchmark (mouse) | 2 | ||||||||
Aligned words | 507 | ||||||||
TF family | Tal-related factors {1.2.3} | ||||||||
TF subfamily | Neurogenin / Atonal-like factors {1.2.3.4} | ||||||||
HGNC | HGNC:7762 | ||||||||
EntrezGene | GeneID:4760 (SSTAR profile) | ||||||||
UniProt ID | NDF1_HUMAN | ||||||||
UniProt AC | Q13562 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | NEUROD1 expression | ||||||||
ReMap ChIP-seq dataset list | NEUROD1 datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 18.0 | 14.0 | 62.0 | 15.0 | 49.0 | 30.0 | 22.0 | 24.0 | 42.0 | 25.0 | 83.0 | 28.0 | 14.0 | 14.0 | 48.0 | 12.0 |
02 | 23.0 | 22.0 | 59.0 | 19.0 | 22.0 | 19.0 | 7.0 | 35.0 | 45.0 | 39.0 | 60.0 | 71.0 | 12.0 | 13.0 | 40.0 | 14.0 |
03 | 37.0 | 6.0 | 57.0 | 2.0 | 62.0 | 6.0 | 25.0 | 0.0 | 84.0 | 22.0 | 50.0 | 10.0 | 37.0 | 1.0 | 101.0 | 0.0 |
04 | 106.0 | 32.0 | 82.0 | 0.0 | 26.0 | 8.0 | 1.0 | 0.0 | 136.0 | 57.0 | 38.0 | 2.0 | 1.0 | 7.0 | 4.0 | 0.0 |
05 | 10.0 | 258.0 | 1.0 | 0.0 | 1.0 | 103.0 | 0.0 | 0.0 | 0.0 | 123.0 | 2.0 | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 |
06 | 12.0 | 0.0 | 0.0 | 0.0 | 484.0 | 0.0 | 0.0 | 1.0 | 3.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
07 | 2.0 | 0.0 | 484.0 | 13.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
08 | 1.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 361.0 | 101.0 | 23.0 | 0.0 | 12.0 | 0.0 | 1.0 | 0.0 |
09 | 2.0 | 0.0 | 0.0 | 372.0 | 0.0 | 0.0 | 0.0 | 101.0 | 0.0 | 0.0 | 0.0 | 25.0 | 0.0 | 0.0 | 0.0 | 0.0 |
10 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 495.0 | 2.0 |
11 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.0 | 25.0 | 385.0 | 84.0 | 0.0 | 0.0 | 2.0 | 0.0 |
12 | 0.0 | 2.0 | 0.0 | 1.0 | 1.0 | 5.0 | 0.0 | 19.0 | 34.0 | 172.0 | 46.0 | 136.0 | 4.0 | 20.0 | 11.0 | 49.0 |
13 | 6.0 | 10.0 | 20.0 | 3.0 | 77.0 | 41.0 | 22.0 | 59.0 | 11.0 | 18.0 | 10.0 | 18.0 | 30.0 | 63.0 | 89.0 | 23.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.543 | -0.788 | 0.679 | -0.721 | 0.445 | -0.04 | -0.346 | -0.26 | 0.293 | -0.22 | 0.969 | -0.108 | -0.788 | -0.788 | 0.425 | -0.938 |
02 | -0.302 | -0.346 | 0.63 | -0.49 | -0.346 | -0.49 | -1.454 | 0.112 | 0.361 | 0.219 | 0.646 | 0.814 | -0.938 | -0.86 | 0.244 | -0.788 |
03 | 0.167 | -1.6 | 0.595 | -2.584 | 0.679 | -1.6 | -0.22 | -4.4 | 0.981 | -0.346 | 0.465 | -1.114 | 0.167 | -3.126 | 1.165 | -4.4 |
04 | 1.213 | 0.023 | 0.957 | -4.4 | -0.181 | -1.328 | -3.126 | -4.4 | 1.461 | 0.595 | 0.193 | -2.584 | -3.126 | -1.454 | -1.975 | -4.4 |
05 | -1.114 | 2.1 | -3.126 | -4.4 | -3.126 | 1.184 | -4.4 | -4.4 | -4.4 | 1.361 | -2.584 | -4.4 | -3.126 | -3.126 | -4.4 | -4.4 |
06 | -0.938 | -4.4 | -4.4 | -4.4 | 2.729 | -4.4 | -4.4 | -3.126 | -2.234 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 |
07 | -2.584 | -4.4 | 2.729 | -0.86 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 |
08 | -3.126 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | 2.436 | 1.165 | -0.302 | -4.4 | -0.938 | -4.4 | -3.126 | -4.4 |
09 | -2.584 | -4.4 | -4.4 | 2.466 | -4.4 | -4.4 | -4.4 | 1.165 | -4.4 | -4.4 | -4.4 | -0.22 | -4.4 | -4.4 | -4.4 | -4.4 |
10 | -4.4 | -4.4 | -2.584 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -3.126 | -4.4 | 2.751 | -2.584 |
11 | -4.4 | -4.4 | -3.126 | -4.4 | -4.4 | -4.4 | -4.4 | -4.4 | -2.234 | -0.22 | 2.5 | 0.981 | -4.4 | -4.4 | -2.584 | -4.4 |
12 | -4.4 | -2.584 | -4.4 | -3.126 | -3.126 | -1.77 | -4.4 | -0.49 | 0.083 | 1.695 | 0.383 | 1.461 | -1.975 | -0.439 | -1.022 | 0.445 |
13 | -1.6 | -1.114 | -0.439 | -2.234 | 0.894 | 0.269 | -0.346 | 0.63 | -1.022 | -0.543 | -1.114 | -0.543 | -0.04 | 0.695 | 1.039 | -0.302 |