We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNEUROD1
(GeneCards)
ModelNDF1_HUMAN.H11DI.0.A
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length14
Quality
A
Motif rank
0
ConsensusnvnRRCAGATGGbn
Best auROC (human)0.949
Best auROC (mouse)0.96
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)2
Aligned words507
TF familyTal-related factors {1.2.3}
TF subfamilyNeurogenin / Atonal-like factors {1.2.3.4}
HGNCHGNC:7762
EntrezGeneGeneID:4760
(SSTAR profile)
UniProt IDNDF1_HUMAN
UniProt ACQ13562
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.8243100000000005
0.0005 9.291360000000001
0.0001 14.953715
GTEx tissue expression atlas NEUROD1 expression
ReMap ChIP-seq dataset list NEUROD1 datasets
Motifs in JASPAR
MA1109.1 (NEUROD1; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0118.014.062.015.049.030.022.024.042.025.083.028.014.014.048.012.0
0223.022.059.019.022.019.07.035.045.039.060.071.012.013.040.014.0
0337.06.057.02.062.06.025.00.084.022.050.010.037.01.0101.00.0
04106.032.082.00.026.08.01.00.0136.057.038.02.01.07.04.00.0
0510.0258.01.00.01.0103.00.00.00.0123.02.00.01.01.00.00.0
0612.00.00.00.0484.00.00.01.03.00.00.00.00.00.00.00.0
072.00.0484.013.00.00.00.00.00.00.00.00.00.00.01.00.0
081.00.01.00.00.00.00.00.0361.0101.023.00.012.00.01.00.0
092.00.00.0372.00.00.00.0101.00.00.00.025.00.00.00.00.0
100.00.02.00.00.00.00.00.00.00.00.00.01.00.0495.02.0
110.00.01.00.00.00.00.00.03.025.0385.084.00.00.02.00.0
120.02.00.01.01.05.00.019.034.0172.046.0136.04.020.011.049.0
136.010.020.03.077.041.022.059.011.018.010.018.030.063.089.023.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.543-0.7880.679-0.7210.445-0.04-0.346-0.260.293-0.220.969-0.108-0.788-0.7880.425-0.938
02-0.302-0.3460.63-0.49-0.346-0.49-1.4540.1120.3610.2190.6460.814-0.938-0.860.244-0.788
030.167-1.60.595-2.5840.679-1.6-0.22-4.40.981-0.3460.465-1.1140.167-3.1261.165-4.4
041.2130.0230.957-4.4-0.181-1.328-3.126-4.41.4610.5950.193-2.584-3.126-1.454-1.975-4.4
05-1.1142.1-3.126-4.4-3.1261.184-4.4-4.4-4.41.361-2.584-4.4-3.126-3.126-4.4-4.4
06-0.938-4.4-4.4-4.42.729-4.4-4.4-3.126-2.234-4.4-4.4-4.4-4.4-4.4-4.4-4.4
07-2.584-4.42.729-0.86-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4
08-3.126-4.4-3.126-4.4-4.4-4.4-4.4-4.42.4361.165-0.302-4.4-0.938-4.4-3.126-4.4
09-2.584-4.4-4.42.466-4.4-4.4-4.41.165-4.4-4.4-4.4-0.22-4.4-4.4-4.4-4.4
10-4.4-4.4-2.584-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.42.751-2.584
11-4.4-4.4-3.126-4.4-4.4-4.4-4.4-4.4-2.234-0.222.50.981-4.4-4.4-2.584-4.4
12-4.4-2.584-4.4-3.126-3.126-1.77-4.4-0.490.0831.6950.3831.461-1.975-0.439-1.0220.445
13-1.6-1.114-0.439-2.2340.8940.269-0.3460.63-1.022-0.543-1.114-0.543-0.040.6951.039-0.302