We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNEUROD1
(GeneCards)
ModelNDF1_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
A
Motif rank
0
ConsensusRRCAGMTGGb
Best auROC (human)0.946
Best auROC (mouse)0.952
Peak sets in benchmark (human)5
Peak sets in benchmark (mouse)2
Aligned words503
TF familyTal-related factors {1.2.3}
TF subfamilyNeurogenin / Atonal-like factors {1.2.3.4}
HGNCHGNC:7762
EntrezGeneGeneID:4760
(SSTAR profile)
UniProt IDNDF1_HUMAN
UniProt ACQ13562
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 3.947985
0.0005 5.05779
0.0001 7.516705
GTEx tissue expression atlas NEUROD1 expression
ReMap ChIP-seq dataset list NEUROD1 datasets
Motifs in JASPAR
MA1109.1 (NEUROD1; Homo sapiens)
PCM
ACGT
01217.036.0235.012.0
02262.0104.0133.01.0
0311.0488.01.00.0
04499.00.00.01.0
051.00.0487.012.0
06365.0110.025.00.0
074.00.00.0496.0
081.00.0496.03.0
094.024.0384.088.0
1038.0198.063.0201.0
PWM
ACGT
010.546-1.2150.626-2.234
020.734-0.1810.061-3.903
03-2.3111.353-3.903-4.4
041.375-4.4-4.4-3.903
05-3.903-4.41.351-2.234
061.063-0.126-1.561-4.4
07-3.126-4.4-4.41.369
08-3.903-4.41.369-3.325
09-3.126-1.61.114-0.346
10-1.1630.455-0.6730.47