Transcription factor | Neurod1 | ||||||||
Model | NDF1_MOUSE.H11MO.0.A | ||||||||
Model type | Mononucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 10 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | RRCAGMTGGb | ||||||||
Best auROC (human) | 0.946 | ||||||||
Best auROC (mouse) | 0.952 | ||||||||
Peak sets in benchmark (human) | 5 | ||||||||
Peak sets in benchmark (mouse) | 2 | ||||||||
Aligned words | 503 | ||||||||
TF family | Tal-related factors {1.2.3} | ||||||||
TF subfamily | Neurogenin / Atonal-like factors {1.2.3.4} | ||||||||
MGI | MGI:1339708 | ||||||||
EntrezGene | GeneID:18012 (SSTAR profile) | ||||||||
UniProt ID | NDF1_MOUSE | ||||||||
UniProt AC | Q60867 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | Neurod1 expression | ||||||||
Motifs in JASPAR |
A | C | G | T | |
---|---|---|---|---|
01 | 217.0 | 36.0 | 235.0 | 12.0 |
02 | 262.0 | 104.0 | 133.0 | 1.0 |
03 | 11.0 | 488.0 | 1.0 | 0.0 |
04 | 499.0 | 0.0 | 0.0 | 1.0 |
05 | 1.0 | 0.0 | 487.0 | 12.0 |
06 | 365.0 | 110.0 | 25.0 | 0.0 |
07 | 4.0 | 0.0 | 0.0 | 496.0 |
08 | 1.0 | 0.0 | 496.0 | 3.0 |
09 | 4.0 | 24.0 | 384.0 | 88.0 |
10 | 38.0 | 198.0 | 63.0 | 201.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.546 | -1.215 | 0.626 | -2.234 |
02 | 0.734 | -0.181 | 0.061 | -3.903 |
03 | -2.311 | 1.353 | -3.903 | -4.4 |
04 | 1.375 | -4.4 | -4.4 | -3.903 |
05 | -3.903 | -4.4 | 1.351 | -2.234 |
06 | 1.063 | -0.126 | -1.561 | -4.4 |
07 | -3.126 | -4.4 | -4.4 | 1.369 |
08 | -3.903 | -4.4 | 1.369 | -3.325 |
09 | -3.126 | -1.6 | 1.114 | -0.346 |
10 | -1.163 | 0.455 | -0.673 | 0.47 |