We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNEUROD2
(GeneCards)
ModelNDF2_HUMAN.H11DI.0.B
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
B
Motif rank
0
ConsensusdvvvnRRCAGATGGn
Best auROC (human)0.619
Best auROC (mouse)0.97
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)21
Aligned words560
TF familyTal-related factors {1.2.3}
TF subfamilyNeurogenin / Atonal-like factors {1.2.3.4}
HGNCHGNC:7763
EntrezGeneGeneID:4761
(SSTAR profile)
UniProt IDNDF2_HUMAN
UniProt ACQ15784
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 7.799010000000001
0.0005 10.258510000000001
0.0001 15.04686
GTEx tissue expression atlas NEUROD2 expression
ReMap ChIP-seq dataset list NEUROD2 datasets
Motifs in JASPAR
MA0668.1 (NEUROD2; Homo sapiens)
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
0128.028.053.09.015.023.012.022.043.051.086.025.013.018.047.027.0
0222.021.048.08.060.036.010.014.057.057.065.019.019.010.047.07.0
0324.026.092.016.051.014.027.032.051.018.083.018.06.014.022.06.0
0428.020.058.026.024.014.09.025.060.048.072.044.013.014.037.08.0
0543.07.071.04.064.08.014.010.092.019.059.06.015.05.080.03.0
0680.030.0104.00.025.09.05.00.0129.033.061.01.014.07.01.01.0
071.0247.00.00.00.079.00.00.00.0170.00.01.00.02.00.00.0
081.00.00.00.0498.00.00.00.00.00.00.00.01.00.00.00.0
090.010.0463.027.00.00.00.00.00.00.00.00.00.00.00.00.0
100.00.00.00.09.00.01.00.0335.0116.011.01.023.02.02.00.0
1130.04.00.0333.018.01.00.099.00.00.00.014.00.00.00.01.0
120.00.048.00.00.00.05.00.00.00.00.00.01.00.0419.027.0
130.00.01.00.00.00.00.00.03.046.0401.022.00.00.025.02.0
140.02.01.00.010.019.02.015.067.0124.0114.0122.03.014.05.02.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-0.108-0.1080.523-1.215-0.721-0.302-0.938-0.3460.3160.4851.004-0.22-0.86-0.5430.404-0.144
02-0.346-0.3920.425-1.3280.6460.14-1.114-0.7880.5950.5950.726-0.49-0.49-1.1140.404-1.454
03-0.26-0.1811.072-0.6580.485-0.788-0.1440.0230.485-0.5430.969-0.543-1.6-0.788-0.346-1.6
04-0.108-0.4390.613-0.181-0.26-0.788-1.215-0.220.6460.4250.8280.339-0.86-0.7880.167-1.328
050.316-1.4540.814-1.9750.711-1.328-0.788-1.1141.072-0.490.63-1.6-0.721-1.770.932-2.234
060.932-0.041.194-4.4-0.22-1.215-1.77-4.41.4080.0540.663-3.126-0.788-1.454-3.126-3.126
07-3.1262.057-4.4-4.4-4.40.92-4.4-4.4-4.41.684-4.4-3.126-4.4-2.584-4.4-4.4
08-3.126-4.4-4.4-4.42.757-4.4-4.4-4.4-4.4-4.4-4.4-4.4-3.126-4.4-4.4-4.4
09-4.4-1.1142.684-0.144-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
10-4.4-4.4-4.4-4.4-1.215-4.4-3.126-4.42.3611.303-1.022-3.126-0.302-2.584-2.584-4.4
11-0.04-1.975-4.42.355-0.543-3.126-4.41.145-4.4-4.4-4.4-0.788-4.4-4.4-4.4-3.126
12-4.4-4.40.425-4.4-4.4-4.4-1.77-4.4-4.4-4.4-4.4-4.4-3.126-4.42.584-0.144
13-4.4-4.4-3.126-4.4-4.4-4.4-4.4-4.4-2.2340.3832.541-0.346-4.4-4.4-0.22-2.584
14-4.4-2.584-3.126-4.4-1.114-0.49-2.584-0.7210.7561.3691.2851.353-2.234-0.788-1.77-2.584