We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNEUROD2
(GeneCards)
ModelNDF2_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
B
Motif rank
0
ConsensusRRCAGMTGG
Best auROC (human)0.594
Best auROC (mouse)0.963
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)21
Aligned words502
TF familyTal-related factors {1.2.3}
TF subfamilyNeurogenin / Atonal-like factors {1.2.3.4}
HGNCHGNC:7763
EntrezGeneGeneID:4761
(SSTAR profile)
UniProt IDNDF2_HUMAN
UniProt ACQ15784
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.409655000000001
0.0005 5.5262150000000005
0.0001 7.67719
GTEx tissue expression atlas NEUROD2 expression
ReMap ChIP-seq dataset list NEUROD2 datasets
Motifs in JASPAR
MA0668.1 (NEUROD2; Homo sapiens)
PCM
ACGT
01232.050.0203.015.0
02236.049.0213.02.0
034.0495.01.00.0
04500.00.00.00.0
050.011.0477.012.0
06339.0140.016.05.0
0756.03.03.0438.0
080.00.0476.024.0
093.067.0417.013.0
PWM
ACGT
010.613-0.8980.48-2.034
020.63-0.9180.528-3.573
03-3.1261.367-3.903-4.4
041.377-4.4-4.4-4.4
05-4.4-2.3111.33-2.234
060.990.112-1.975-2.961
07-0.788-3.325-3.3251.245
08-4.4-4.41.328-1.6
09-3.325-0.6131.196-2.163