Model info
| Transcription factor | NEUROD2 (GeneCards) | ||||||||
| Model | NDF2_HUMAN.H11MO.0.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | B | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RRCAGMTGG | ||||||||
| Best auROC (human) | 0.594 | ||||||||
| Best auROC (mouse) | 0.963 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 21 | ||||||||
| Aligned words | 502 | ||||||||
| TF family | Tal-related factors {1.2.3} | ||||||||
| TF subfamily | Neurogenin / Atonal-like factors {1.2.3.4} | ||||||||
| HGNC | HGNC:7763 | ||||||||
| EntrezGene | GeneID:4761 (SSTAR profile) | ||||||||
| UniProt ID | NDF2_HUMAN | ||||||||
| UniProt AC | Q15784 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NEUROD2 expression | ||||||||
| ReMap ChIP-seq dataset list | NEUROD2 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 232.0 | 50.0 | 203.0 | 15.0 |
| 02 | 236.0 | 49.0 | 213.0 | 2.0 |
| 03 | 4.0 | 495.0 | 1.0 | 0.0 |
| 04 | 500.0 | 0.0 | 0.0 | 0.0 |
| 05 | 0.0 | 11.0 | 477.0 | 12.0 |
| 06 | 339.0 | 140.0 | 16.0 | 5.0 |
| 07 | 56.0 | 3.0 | 3.0 | 438.0 |
| 08 | 0.0 | 0.0 | 476.0 | 24.0 |
| 09 | 3.0 | 67.0 | 417.0 | 13.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.613 | -0.898 | 0.48 | -2.034 |
| 02 | 0.63 | -0.918 | 0.528 | -3.573 |
| 03 | -3.126 | 1.367 | -3.903 | -4.4 |
| 04 | 1.377 | -4.4 | -4.4 | -4.4 |
| 05 | -4.4 | -2.311 | 1.33 | -2.234 |
| 06 | 0.99 | 0.112 | -1.975 | -2.961 |
| 07 | -0.788 | -3.325 | -3.325 | 1.245 |
| 08 | -4.4 | -4.4 | 1.328 | -1.6 |
| 09 | -3.325 | -0.613 | 1.196 | -2.163 |