Model info
| Transcription factor | Neurod2 | ||||||||
| Model | NDF2_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | RRCAGATGGb | ||||||||
| Best auROC (human) | 0.543 | ||||||||
| Best auROC (mouse) | 0.961 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 21 | ||||||||
| Aligned words | 503 | ||||||||
| TF family | Tal-related factors {1.2.3} | ||||||||
| TF subfamily | Neurogenin / Atonal-like factors {1.2.3.4} | ||||||||
| MGI | MGI:107755 | ||||||||
| EntrezGene | GeneID:18013 (SSTAR profile) | ||||||||
| UniProt ID | NDF2_MOUSE | ||||||||
| UniProt AC | Q62414 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Neurod2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 245.0 | 41.0 | 182.0 | 32.0 |
| 02 | 211.0 | 97.0 | 190.0 | 2.0 |
| 03 | 1.0 | 499.0 | 0.0 | 0.0 |
| 04 | 500.0 | 0.0 | 0.0 | 0.0 |
| 05 | 1.0 | 3.0 | 464.0 | 32.0 |
| 06 | 375.0 | 112.0 | 12.0 | 1.0 |
| 07 | 52.0 | 1.0 | 3.0 | 444.0 |
| 08 | 1.0 | 0.0 | 479.0 | 20.0 |
| 09 | 2.0 | 87.0 | 394.0 | 17.0 |
| 10 | 50.0 | 196.0 | 81.0 | 173.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.667 | -1.09 | 0.372 | -1.328 |
| 02 | 0.519 | -0.25 | 0.415 | -3.573 |
| 03 | -3.903 | 1.375 | -4.4 | -4.4 |
| 04 | 1.377 | -4.4 | -4.4 | -4.4 |
| 05 | -3.903 | -3.325 | 1.303 | -1.328 |
| 06 | 1.09 | -0.108 | -2.234 | -3.903 |
| 07 | -0.86 | -3.903 | -3.325 | 1.259 |
| 08 | -3.903 | -4.4 | 1.334 | -1.77 |
| 09 | -3.573 | -0.357 | 1.14 | -1.92 |
| 10 | -0.898 | 0.445 | -0.427 | 0.322 |