Transcription factor | NFATC1 (GeneCards) | ||||||||
Model | NFAC1_HUMAN.H11DI.0.A | ||||||||
Model type | Dinucleotide PWM | ||||||||
LOGO | |||||||||
LOGO (reverse complement) | |||||||||
Data source | ChIP-Seq | ||||||||
Model release | HOCOMOCOv11 | ||||||||
Model length | 18 | ||||||||
Quality | A | ||||||||
Motif rank | 0 | ||||||||
Consensus | dWGGAARndnTKWvYMWn | ||||||||
Best auROC (human) | 0.812 | ||||||||
Best auROC (mouse) | 0.954 | ||||||||
Peak sets in benchmark (human) | 7 | ||||||||
Peak sets in benchmark (mouse) | 8 | ||||||||
Aligned words | 500 | ||||||||
TF family | NFAT-related factors {6.1.3} | ||||||||
TF subfamily | NFATc1 {6.1.3.0.1} | ||||||||
HGNC | HGNC:7775 | ||||||||
EntrezGene | GeneID:4772 (SSTAR profile) | ||||||||
UniProt ID | NFAC1_HUMAN | ||||||||
UniProt AC | O95644 (TFClass) | ||||||||
Comment | |||||||||
Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
Standard thresholds |
| ||||||||
GTEx tissue expression atlas | NFATC1 expression | ||||||||
ReMap ChIP-seq dataset list | NFATC1 datasets | ||||||||
Motifs in JASPAR |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | 31.0 | 8.0 | 8.0 | 176.0 | 18.0 | 4.0 | 0.0 | 59.0 | 21.0 | 3.0 | 10.0 | 65.0 | 30.0 | 8.0 | 17.0 | 42.0 |
02 | 1.0 | 1.0 | 97.0 | 1.0 | 2.0 | 0.0 | 21.0 | 0.0 | 0.0 | 1.0 | 33.0 | 1.0 | 2.0 | 1.0 | 338.0 | 1.0 |
03 | 0.0 | 0.0 | 5.0 | 0.0 | 0.0 | 0.0 | 3.0 | 0.0 | 2.0 | 2.0 | 485.0 | 0.0 | 0.0 | 0.0 | 3.0 | 0.0 |
04 | 2.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 | 470.0 | 7.0 | 17.0 | 2.0 | 0.0 | 0.0 | 0.0 | 0.0 |
05 | 444.0 | 0.0 | 21.0 | 7.0 | 9.0 | 0.0 | 0.0 | 0.0 | 14.0 | 0.0 | 2.0 | 1.0 | 1.0 | 0.0 | 0.0 | 1.0 |
06 | 378.0 | 29.0 | 34.0 | 27.0 | 0.0 | 0.0 | 0.0 | 0.0 | 16.0 | 2.0 | 4.0 | 1.0 | 7.0 | 1.0 | 0.0 | 1.0 |
07 | 229.0 | 70.0 | 76.0 | 26.0 | 15.0 | 11.0 | 2.0 | 4.0 | 22.0 | 8.0 | 8.0 | 0.0 | 10.0 | 6.0 | 9.0 | 4.0 |
08 | 90.0 | 22.0 | 36.0 | 128.0 | 40.0 | 6.0 | 4.0 | 45.0 | 51.0 | 5.0 | 8.0 | 31.0 | 9.0 | 3.0 | 10.0 | 12.0 |
09 | 75.0 | 39.0 | 55.0 | 21.0 | 16.0 | 7.0 | 6.0 | 7.0 | 24.0 | 13.0 | 9.0 | 12.0 | 62.0 | 56.0 | 68.0 | 30.0 |
10 | 14.0 | 5.0 | 7.0 | 151.0 | 7.0 | 7.0 | 2.0 | 99.0 | 15.0 | 11.0 | 4.0 | 108.0 | 6.0 | 13.0 | 5.0 | 46.0 |
11 | 7.0 | 6.0 | 21.0 | 8.0 | 10.0 | 10.0 | 2.0 | 14.0 | 2.0 | 9.0 | 5.0 | 2.0 | 22.0 | 13.0 | 295.0 | 74.0 |
12 | 21.0 | 4.0 | 11.0 | 5.0 | 19.0 | 7.0 | 2.0 | 10.0 | 266.0 | 12.0 | 19.0 | 26.0 | 51.0 | 17.0 | 12.0 | 18.0 |
13 | 50.0 | 118.0 | 162.0 | 27.0 | 10.0 | 14.0 | 11.0 | 5.0 | 6.0 | 19.0 | 13.0 | 6.0 | 5.0 | 13.0 | 37.0 | 4.0 |
14 | 14.0 | 15.0 | 8.0 | 34.0 | 27.0 | 15.0 | 7.0 | 115.0 | 19.0 | 25.0 | 19.0 | 160.0 | 1.0 | 8.0 | 12.0 | 21.0 |
15 | 21.0 | 30.0 | 7.0 | 3.0 | 22.0 | 21.0 | 2.0 | 18.0 | 11.0 | 18.0 | 9.0 | 8.0 | 33.0 | 241.0 | 38.0 | 18.0 |
16 | 52.0 | 11.0 | 16.0 | 8.0 | 267.0 | 20.0 | 3.0 | 20.0 | 19.0 | 4.0 | 17.0 | 16.0 | 10.0 | 14.0 | 14.0 | 9.0 |
17 | 41.0 | 105.0 | 101.0 | 101.0 | 21.0 | 13.0 | 2.0 | 13.0 | 6.0 | 11.0 | 17.0 | 16.0 | 6.0 | 13.0 | 19.0 | 15.0 |
AA | AC | AG | AT | CA | CC | CG | CT | GA | GC | GG | GT | TA | TC | TG | TT | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
01 | -0.008 | -1.328 | -1.328 | 1.718 | -0.543 | -1.975 | -4.4 | 0.63 | -0.392 | -2.234 | -1.114 | 0.726 | -0.04 | -1.328 | -0.599 | 0.293 |
02 | -3.126 | -3.126 | 1.124 | -3.126 | -2.584 | -4.4 | -0.392 | -4.4 | -4.4 | -3.126 | 0.054 | -3.126 | -2.584 | -3.126 | 2.37 | -3.126 |
03 | -4.4 | -4.4 | -1.77 | -4.4 | -4.4 | -4.4 | -2.234 | -4.4 | -2.584 | -2.584 | 2.731 | -4.4 | -4.4 | -4.4 | -2.234 | -4.4 |
04 | -2.584 | -4.4 | -4.4 | -4.4 | -4.4 | -2.584 | -4.4 | -4.4 | 2.699 | -1.454 | -0.599 | -2.584 | -4.4 | -4.4 | -4.4 | -4.4 |
05 | 2.642 | -4.4 | -0.392 | -1.454 | -1.215 | -4.4 | -4.4 | -4.4 | -0.788 | -4.4 | -2.584 | -3.126 | -3.126 | -4.4 | -4.4 | -3.126 |
06 | 2.482 | -0.074 | 0.083 | -0.144 | -4.4 | -4.4 | -4.4 | -4.4 | -0.658 | -2.584 | -1.975 | -3.126 | -1.454 | -3.126 | -4.4 | -3.126 |
07 | 1.981 | 0.8 | 0.881 | -0.181 | -0.721 | -1.022 | -2.584 | -1.975 | -0.346 | -1.328 | -1.328 | -4.4 | -1.114 | -1.6 | -1.215 | -1.975 |
08 | 1.05 | -0.346 | 0.14 | 1.401 | 0.244 | -1.6 | -1.975 | 0.361 | 0.485 | -1.77 | -1.328 | -0.008 | -1.215 | -2.234 | -1.114 | -0.938 |
09 | 0.868 | 0.219 | 0.56 | -0.392 | -0.658 | -1.454 | -1.6 | -1.454 | -0.26 | -0.86 | -1.215 | -0.938 | 0.679 | 0.578 | 0.771 | -0.04 |
10 | -0.788 | -1.77 | -1.454 | 1.565 | -1.454 | -1.454 | -2.584 | 1.145 | -0.721 | -1.022 | -1.975 | 1.231 | -1.6 | -0.86 | -1.77 | 0.383 |
11 | -1.454 | -1.6 | -0.392 | -1.328 | -1.114 | -1.114 | -2.584 | -0.788 | -2.584 | -1.215 | -1.77 | -2.584 | -0.346 | -0.86 | 2.234 | 0.855 |
12 | -0.392 | -1.975 | -1.022 | -1.77 | -0.49 | -1.454 | -2.584 | -1.114 | 2.131 | -0.938 | -0.49 | -0.181 | 0.485 | -0.599 | -0.938 | -0.543 |
13 | 0.465 | 1.32 | 1.636 | -0.144 | -1.114 | -0.788 | -1.022 | -1.77 | -1.6 | -0.49 | -0.86 | -1.6 | -1.77 | -0.86 | 0.167 | -1.975 |
14 | -0.788 | -0.721 | -1.328 | 0.083 | -0.144 | -0.721 | -1.454 | 1.294 | -0.49 | -0.22 | -0.49 | 1.623 | -3.126 | -1.328 | -0.938 | -0.392 |
15 | -0.392 | -0.04 | -1.454 | -2.234 | -0.346 | -0.392 | -2.584 | -0.543 | -1.022 | -0.543 | -1.215 | -1.328 | 0.054 | 2.032 | 0.193 | -0.543 |
16 | 0.504 | -1.022 | -0.658 | -1.328 | 2.134 | -0.439 | -2.234 | -0.439 | -0.49 | -1.975 | -0.599 | -0.658 | -1.114 | -0.788 | -0.788 | -1.215 |
17 | 0.269 | 1.203 | 1.165 | 1.165 | -0.392 | -0.86 | -2.584 | -0.86 | -1.6 | -1.022 | -0.599 | -0.658 | -1.6 | -0.86 | -0.49 | -0.721 |