We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNFATC1
(GeneCards)
ModelNFAC1_HUMAN.H11MO.0.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
B
Motif rank
0
ConsensusvWGGAAAvdvWRvvd
Best auROC (human)0.868
Best auROC (mouse)0.795
Peak sets in benchmark (human)7
Peak sets in benchmark (mouse)8
Aligned words500
TF familyNFAT-related factors {6.1.3}
TF subfamilyNFATc1 {6.1.3.0.1}
HGNCHGNC:7775
EntrezGeneGeneID:4772
(SSTAR profile)
UniProt IDNFAC1_HUMAN
UniProt ACO95644
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.99611
0.0005 6.823410000000001
0.0001 8.48641
GTEx tissue expression atlas NFATC1 expression
ReMap ChIP-seq dataset list NFATC1 datasets
Motifs in JASPAR
MA0624.1 (NFATC1; Meleagris gallopavo)
PCM
ACGT
01241.0115.0117.027.0
02197.025.030.0248.0
0342.04.0452.02.0
047.023.0465.05.0
05473.06.018.03.0
06405.034.052.09.0
07411.034.042.013.0
08250.083.0134.033.0
09247.026.071.0156.0
10178.0119.0173.030.0
11244.044.022.0190.0
12132.015.0274.079.0
13269.061.0111.059.0
14215.0159.094.032.0
15225.060.069.0146.0
PWM
ACGT
010.651-0.082-0.065-1.489
020.45-1.561-1.3890.679
03-1.067-3.1261.276-3.573
04-2.694-1.641.305-2.961
051.322-2.819-1.868-3.325
061.167-1.27-0.86-2.484
071.182-1.27-1.067-2.163
080.687-0.4030.069-1.298
090.675-1.525-0.5560.219
100.35-0.0490.322-1.389
110.663-1.022-1.6810.415
120.054-2.0340.778-0.452
130.76-0.705-0.117-0.737
140.5370.238-0.281-1.328
150.582-0.721-0.5840.154