Model info
| Transcription factor | NFATC1 (GeneCards) | ||||||||
| Model | NFAC1_HUMAN.H11MO.1.B | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 10 | ||||||||
| Quality | B | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | vvWGGAAARn | ||||||||
| Best auROC (human) | 0.792 | ||||||||
| Best auROC (mouse) | 0.828 | ||||||||
| Peak sets in benchmark (human) | 7 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | NFAT-related factors {6.1.3} | ||||||||
| TF subfamily | NFATc1 {6.1.3.0.1} | ||||||||
| HGNC | HGNC:7775 | ||||||||
| EntrezGene | GeneID:4772 (SSTAR profile) | ||||||||
| UniProt ID | NFAC1_HUMAN | ||||||||
| UniProt AC | O95644 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NFATC1 expression | ||||||||
| ReMap ChIP-seq dataset list | NFATC1 datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 239.0 | 91.0 | 113.0 | 57.0 |
| 02 | 239.0 | 87.0 | 97.0 | 77.0 |
| 03 | 97.0 | 14.0 | 17.0 | 372.0 |
| 04 | 2.0 | 0.0 | 497.0 | 1.0 |
| 05 | 1.0 | 0.0 | 497.0 | 2.0 |
| 06 | 486.0 | 2.0 | 11.0 | 1.0 |
| 07 | 494.0 | 2.0 | 1.0 | 3.0 |
| 08 | 474.0 | 5.0 | 14.0 | 7.0 |
| 09 | 286.0 | 92.0 | 98.0 | 24.0 |
| 10 | 209.0 | 27.0 | 55.0 | 209.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.642 | -0.313 | -0.1 | -0.771 |
| 02 | 0.642 | -0.357 | -0.25 | -0.477 |
| 03 | -0.25 | -2.096 | -1.92 | 1.082 |
| 04 | -3.573 | -4.4 | 1.371 | -3.903 |
| 05 | -3.903 | -4.4 | 1.371 | -3.573 |
| 06 | 1.349 | -3.573 | -2.311 | -3.903 |
| 07 | 1.365 | -3.573 | -3.903 | -3.325 |
| 08 | 1.324 | -2.961 | -2.096 | -2.694 |
| 09 | 0.821 | -0.302 | -0.24 | -1.6 |
| 10 | 0.509 | -1.489 | -0.805 | 0.509 |