We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNFATC1
(GeneCards)
ModelNFAC1_HUMAN.H11MO.1.B
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length10
Quality
B
Motif rank
1
ConsensusvvWGGAAARn
Best auROC (human)0.792
Best auROC (mouse)0.828
Peak sets in benchmark (human)7
Peak sets in benchmark (mouse)8
Aligned words500
TF familyNFAT-related factors {6.1.3}
TF subfamilyNFATc1 {6.1.3.0.1}
HGNCHGNC:7775
EntrezGeneGeneID:4772
(SSTAR profile)
UniProt IDNFAC1_HUMAN
UniProt ACO95644
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.705665
0.0005 7.01491
0.0001 8.61487
GTEx tissue expression atlas NFATC1 expression
ReMap ChIP-seq dataset list NFATC1 datasets
Motifs in JASPAR
MA0624.1 (NFATC1; Meleagris gallopavo)
PCM
ACGT
01239.091.0113.057.0
02239.087.097.077.0
0397.014.017.0372.0
042.00.0497.01.0
051.00.0497.02.0
06486.02.011.01.0
07494.02.01.03.0
08474.05.014.07.0
09286.092.098.024.0
10209.027.055.0209.0
PWM
ACGT
010.642-0.313-0.1-0.771
020.642-0.357-0.25-0.477
03-0.25-2.096-1.921.082
04-3.573-4.41.371-3.903
05-3.903-4.41.371-3.573
061.349-3.573-2.311-3.903
071.365-3.573-3.903-3.325
081.324-2.961-2.096-2.694
090.821-0.302-0.24-1.6
100.509-1.489-0.8050.509