Model info
| Transcription factor | Nfatc1 | ||||||||
| Model | NFAC1_MOUSE.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 15 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | WGGAAAndnTKWvhM | ||||||||
| Best auROC (human) | 0.714 | ||||||||
| Best auROC (mouse) | 0.955 | ||||||||
| Peak sets in benchmark (human) | 7 | ||||||||
| Peak sets in benchmark (mouse) | 8 | ||||||||
| Aligned words | 445 | ||||||||
| TF family | NFAT-related factors {6.1.3} | ||||||||
| TF subfamily | NFATc1 {6.1.3.0.1} | ||||||||
| MGI | MGI:102469 | ||||||||
| EntrezGene | |||||||||
| UniProt ID | NFAC1_MOUSE | ||||||||
| UniProt AC | O88942 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nfatc1 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 89.0 | 18.0 | 32.0 | 306.0 |
| 02 | 3.0 | 1.0 | 441.0 | 0.0 |
| 03 | 1.0 | 2.0 | 441.0 | 1.0 |
| 04 | 432.0 | 4.0 | 8.0 | 1.0 |
| 05 | 422.0 | 0.0 | 17.0 | 6.0 |
| 06 | 369.0 | 23.0 | 32.0 | 21.0 |
| 07 | 251.0 | 82.0 | 82.0 | 30.0 |
| 08 | 167.0 | 32.0 | 47.0 | 199.0 |
| 09 | 156.0 | 113.0 | 119.0 | 57.0 |
| 10 | 35.0 | 23.0 | 14.0 | 373.0 |
| 11 | 35.0 | 33.0 | 301.0 | 76.0 |
| 12 | 335.0 | 26.0 | 36.0 | 48.0 |
| 13 | 64.0 | 146.0 | 199.0 | 36.0 |
| 14 | 50.0 | 50.0 | 38.0 | 307.0 |
| 15 | 81.0 | 271.0 | 53.0 | 40.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.22 | -1.754 | -1.213 | 1.003 |
| 02 | -3.216 | -3.799 | 1.367 | -4.304 |
| 03 | -3.799 | -3.466 | 1.367 | -3.799 |
| 04 | 1.347 | -3.016 | -2.472 | -3.799 |
| 05 | 1.323 | -4.304 | -1.806 | -2.707 |
| 06 | 1.19 | -1.526 | -1.213 | -1.611 |
| 07 | 0.806 | -0.3 | -0.3 | -1.275 |
| 08 | 0.402 | -1.213 | -0.843 | 0.576 |
| 09 | 0.334 | 0.015 | 0.066 | -0.656 |
| 10 | -1.127 | -1.526 | -1.983 | 1.2 |
| 11 | -1.127 | -1.184 | 0.987 | -0.375 |
| 12 | 1.093 | -1.41 | -1.1 | -0.823 |
| 13 | -0.543 | 0.269 | 0.576 | -1.1 |
| 14 | -0.783 | -0.783 | -1.048 | 1.006 |
| 15 | -0.312 | 0.882 | -0.727 | -0.999 |