We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNfatc1
ModelNFAC1_MOUSE.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length15
Quality
A
Motif rank
0
ConsensusWGGAAAndnTKWvhM
Best auROC (human)0.714
Best auROC (mouse)0.955
Peak sets in benchmark (human)7
Peak sets in benchmark (mouse)8
Aligned words445
TF familyNFAT-related factors {6.1.3}
TF subfamilyNFATc1 {6.1.3.0.1}
MGIMGI:102469
EntrezGene
UniProt IDNFAC1_MOUSE
UniProt ACO88942
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.846259999999999
0.0005 5.91066
0.0001 8.06921
GTEx tissue expression atlas Nfatc1 expression
Motifs in JASPAR
MA0624.1 (NFATC1; Meleagris gallopavo)
PCM
ACGT
0189.018.032.0306.0
023.01.0441.00.0
031.02.0441.01.0
04432.04.08.01.0
05422.00.017.06.0
06369.023.032.021.0
07251.082.082.030.0
08167.032.047.0199.0
09156.0113.0119.057.0
1035.023.014.0373.0
1135.033.0301.076.0
12335.026.036.048.0
1364.0146.0199.036.0
1450.050.038.0307.0
1581.0271.053.040.0
PWM
ACGT
01-0.22-1.754-1.2131.003
02-3.216-3.7991.367-4.304
03-3.799-3.4661.367-3.799
041.347-3.016-2.472-3.799
051.323-4.304-1.806-2.707
061.19-1.526-1.213-1.611
070.806-0.3-0.3-1.275
080.402-1.213-0.8430.576
090.3340.0150.066-0.656
10-1.127-1.526-1.9831.2
11-1.127-1.1840.987-0.375
121.093-1.41-1.1-0.823
13-0.5430.2690.576-1.1
14-0.783-0.783-1.0481.006
15-0.3120.882-0.727-0.999