NFAC2_MOUSE.H11MO.0.C motif - HOmo sapiens COmprehensive MOdel COllection

We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.

Model info

Transcription factor

Model

NFAC2_MOUSE.H11MO.0.C

Model type

Mononucleotide PWM

LOGO

LOGO (reverse complement)

Data source

Integrative

Model release

HOCOMOCOv9

Model length

9

Quality

C

Motif rank

0

Consensus

dGGAAAWhb

Best auROC (human)

Best auROC (mouse)

0.915

Peak sets in benchmark (human)

Peak sets in benchmark (mouse)

4

Aligned words

87

TF family

NFAT-related factors {6.1.3}

TF subfamily

NFATc2 (NFATp, NFAT1) {6.1.3.0.2}

MGI

EntrezGene

GeneID:18019
(SSTAR profile)

UniProt ID

UniProt AC

Q60591
(TFClass)

Comment

Downloads

pcm
pwm
alignment
threshold to P-value grid

Standard thresholds

P-value	Threshold
0.001	5.665570000000001
0.0005	6.671635
0.0001	8.456154999999999

GTEx tissue expression atlas

Nfatc2 expression

Motifs in JASPAR

MA0152.1 (NFATC2; Mus musculus/Rattus norvegicus/Homo sapiens)

PCM

	A	C	G	T
01	22.035	4.846	12.49	46.595
02	0.0	0.0	85.966	0.0
03	0.0	0.0	85.966	0.0
04	85.966	0.0	0.0	0.0
05	83.596	0.0	2.37	0.0
06	81.838	1.439	2.689	0.0
07	68.399	4.994	5.248	7.325
08	25.549	11.453	8.491	40.473
09	13.742	20.213	14.712	37.299

PWM

	A	C	G	T
01	0.024	-1.333	-0.508	0.747
02	-3.011	-3.011	1.349	-3.011
03	-3.011	-3.011	1.349	-3.011
04	1.349	-3.011	-3.011	-3.011
05	1.321	-3.011	-1.87	-3.011
06	1.3	-2.181	-1.782	-3.011
07	1.123	-1.309	-1.268	-0.985
08	0.165	-0.587	-0.856	0.61
09	-0.42	-0.058	-0.357	0.53