We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNfatc2
ModelNFAC2_MOUSE.H11MO.1.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length7
Quality
C
Motif rank
1
ConsensusvWGGAAR
Best auROC (human)
Best auROC (mouse)0.934
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)4
Aligned words499
TF familyNFAT-related factors {6.1.3}
TF subfamilyNFATc2 (NFATp, NFAT1) {6.1.3.0.2}
MGIMGI:102463
EntrezGeneGeneID:18019
(SSTAR profile)
UniProt IDNFAC2_MOUSE
UniProt ACQ60591
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 6.025825
0.0005 6.716185
0.0001 7.084
GTEx tissue expression atlas Nfatc2 expression
Motifs in JASPAR
PCM
ACGT
01197.099.0154.049.0
02192.010.040.0257.0
035.00.0490.04.0
0415.02.0477.05.0
05452.027.05.015.0
06455.06.027.011.0
07303.067.0120.09.0
PWM
ACGT
010.452-0.2280.208-0.916
020.427-2.392-1.1120.716
03-2.959-4.3981.359-3.124
04-2.032-3.5711.332-2.959
051.278-1.487-2.959-2.032
061.285-2.817-1.487-2.309
070.88-0.611-0.038-2.482