Model info
| Transcription factor | Nfatc2 | ||||||||
| Model | NFAC2_MOUSE.H11MO.1.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 7 | ||||||||
| Quality | C | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | vWGGAAR | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | 0.934 | ||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | 4 | ||||||||
| Aligned words | 499 | ||||||||
| TF family | NFAT-related factors {6.1.3} | ||||||||
| TF subfamily | NFATc2 (NFATp, NFAT1) {6.1.3.0.2} | ||||||||
| MGI | MGI:102463 | ||||||||
| EntrezGene | GeneID:18019 (SSTAR profile) | ||||||||
| UniProt ID | NFAC2_MOUSE | ||||||||
| UniProt AC | Q60591 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nfatc2 expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 197.0 | 99.0 | 154.0 | 49.0 |
| 02 | 192.0 | 10.0 | 40.0 | 257.0 |
| 03 | 5.0 | 0.0 | 490.0 | 4.0 |
| 04 | 15.0 | 2.0 | 477.0 | 5.0 |
| 05 | 452.0 | 27.0 | 5.0 | 15.0 |
| 06 | 455.0 | 6.0 | 27.0 | 11.0 |
| 07 | 303.0 | 67.0 | 120.0 | 9.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.452 | -0.228 | 0.208 | -0.916 |
| 02 | 0.427 | -2.392 | -1.112 | 0.716 |
| 03 | -2.959 | -4.398 | 1.359 | -3.124 |
| 04 | -2.032 | -3.571 | 1.332 | -2.959 |
| 05 | 1.278 | -1.487 | -2.959 | -2.032 |
| 06 | 1.285 | -2.817 | -1.487 | -2.309 |
| 07 | 0.88 | -0.611 | -0.038 | -2.482 |