We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNFIA
(GeneCards)
ModelNFIA_HUMAN.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length15
Quality
C
Motif rank
0
ConsensushTGGShnGnhKCCWd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words233
TF familyNuclear factor 1 {7.1.2}
TF subfamilyNF-1A (NF-IA) {7.1.2.0.1}
HGNCHGNC:7784
EntrezGeneGeneID:4774
(SSTAR profile)
UniProt IDNFIA_HUMAN
UniProt ACQ12857
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.93796
0.0005 5.75651
0.0001 7.4474100000000005
GTEx tissue expression atlas NFIA expression
ReMap ChIP-seq dataset list NFIA datasets
Motifs in JASPAR
MA0670.1 (NFIA; Homo sapiens)
PCM
ACGT
0133.86749.84425.195124.094
027.8117.10116.129201.959
0310.6512.029204.59715.723
0415.3186.898199.2211.564
0525.867167.87526.7812.477
0696.74358.25128.5349.477
0750.0676.2848.23358.427
0885.6310.423146.6930.254
0953.6650.8280.23548.284
1070.530.48223.686108.332
1117.57516.154171.60327.668
1213.897189.27914.65815.165
1313.289195.46713.3910.854
14181.51914.91216.38320.187
15102.67920.92282.69626.704
PWM
ACGT
01-0.526-0.152-0.8090.744
02-1.872-1.952-1.2261.227
03-1.602-2.8671.24-1.25
04-1.274-1.9761.213-1.529
05-0.7841.043-0.751-1.46
060.4980.0-0.69-0.159
07-0.1480.264-0.1840.003
080.378-3.5080.91-3.608
09-0.08-0.1330.314-0.183
100.187-0.627-0.8670.61
11-1.147-1.2251.065-0.72
12-1.3631.163-1.314-1.283
13-1.4031.194-1.396-1.585
141.121-1.298-1.212-1.018
150.557-0.9840.344-0.753