We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNFIA
(GeneCards)
ModelNFIA_HUMAN.H11MO.1.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceIntegrative
Model releaseHOCOMOCOv9
Model length7
Quality
D
Motif rank
1
ConsensushYTGGCd
Best auROC (human)
Best auROC (mouse)
Peak sets in benchmark (human)
Peak sets in benchmark (mouse)
Aligned words267
TF familyNuclear factor 1 {7.1.2}
TF subfamilyNF-1A (NF-IA) {7.1.2.0.1}
HGNCHGNC:7784
EntrezGeneGeneID:4774
(SSTAR profile)
UniProt IDNFIA_HUMAN
UniProt ACQ12857
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.825365
0.0005 6.46203
0.0001 6.944719999999999
GTEx tissue expression atlas NFIA expression
ReMap ChIP-seq dataset list NFIA datasets
Motifs in JASPAR
PCM
ACGT
0166.079104.60942.55651.757
0215.36345.5432.356201.739
031.9460.71713.929248.408
043.4820.0255.276.247
057.6813.38253.4270.512
0614.031234.63312.3933.943
07118.27333.34637.25776.124
PWM
ACGT
01-0.0030.449-0.431-0.241
02-1.395-0.365-2.8921.1
03-3.008-3.467-1.4851.306
04-2.63-3.8811.334-2.181
05-2.009-2.6511.326-3.569
06-1.4781.25-1.591-2.539
070.57-0.666-0.560.136