Model info
| Transcription factor | Nfia | ||||||||
| Model | NFIA_MOUSE.H11MO.1.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | Integrative | ||||||||
| Model release | HOCOMOCOv9 | ||||||||
| Model length | 7 | ||||||||
| Quality | D | ||||||||
| Motif rank | 1 | ||||||||
| Consensus | hYTGGCd | ||||||||
| Best auROC (human) | |||||||||
| Best auROC (mouse) | |||||||||
| Peak sets in benchmark (human) | |||||||||
| Peak sets in benchmark (mouse) | |||||||||
| Aligned words | 267 | ||||||||
| TF family | Nuclear factor 1 {7.1.2} | ||||||||
| TF subfamily | NF-1A (NF-IA) {7.1.2.0.1} | ||||||||
| MGI | MGI:108056 | ||||||||
| EntrezGene | GeneID:18027 (SSTAR profile) | ||||||||
| UniProt ID | NFIA_MOUSE | ||||||||
| UniProt AC | Q02780 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nfia expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 66.079 | 104.609 | 42.556 | 51.757 |
| 02 | 15.363 | 45.543 | 2.356 | 201.739 |
| 03 | 1.946 | 0.717 | 13.929 | 248.408 |
| 04 | 3.482 | 0.0 | 255.27 | 6.247 |
| 05 | 7.681 | 3.38 | 253.427 | 0.512 |
| 06 | 14.031 | 234.633 | 12.393 | 3.943 |
| 07 | 118.273 | 33.346 | 37.257 | 76.124 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.003 | 0.449 | -0.431 | -0.241 |
| 02 | -1.395 | -0.365 | -2.892 | 1.1 |
| 03 | -3.008 | -3.467 | -1.485 | 1.306 |
| 04 | -2.63 | -3.881 | 1.334 | -2.181 |
| 05 | -2.009 | -2.651 | 1.326 | -3.569 |
| 06 | -1.478 | 1.25 | -1.591 | -2.539 |
| 07 | 0.57 | -0.666 | -0.56 | 0.136 |