We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNFIB
(GeneCards)
ModelNFIB_HUMAN.H11MO.0.D
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
D
Motif rank
0
ConsensushYYTGGCWb
Best auROC (human)0.612
Best auROC (mouse)0.829
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)2
Aligned words500
TF familyNuclear factor 1 {7.1.2}
TF subfamilyNF-1B (NF-IB) {7.1.2.0.2}
HGNCHGNC:7785
EntrezGeneGeneID:4781
(SSTAR profile)
UniProt IDNFIB_HUMAN
UniProt ACO00712
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.45087
0.0005 6.60951
0.0001 7.931150000000001
GTEx tissue expression atlas NFIB expression
ReMap ChIP-seq dataset list NFIB datasets
Motifs in JASPAR
PCM
ACGT
0188.0188.074.0150.0
0214.0289.075.0122.0
030.0282.01.0217.0
041.00.04.0495.0
050.00.0500.00.0
061.00.0497.02.0
0715.0482.02.01.0
08329.017.01.0153.0
0937.0147.0248.068.0
PWM
ACGT
01-0.3460.404-0.5160.18
02-2.0960.831-0.503-0.024
03-4.40.807-3.9030.546
04-3.903-4.4-3.1261.367
05-4.4-4.41.377-4.4
06-3.903-4.41.371-3.573
07-2.0341.34-3.573-3.903
080.96-1.92-3.9030.2
09-1.1890.160.679-0.599