Model info
| Transcription factor | NFIB (GeneCards) | ||||||||
| Model | NFIB_HUMAN.H11MO.0.D | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | D | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | hYYTGGCWb | ||||||||
| Best auROC (human) | 0.612 | ||||||||
| Best auROC (mouse) | 0.829 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 2 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Nuclear factor 1 {7.1.2} | ||||||||
| TF subfamily | NF-1B (NF-IB) {7.1.2.0.2} | ||||||||
| HGNC | HGNC:7785 | ||||||||
| EntrezGene | GeneID:4781 (SSTAR profile) | ||||||||
| UniProt ID | NFIB_HUMAN | ||||||||
| UniProt AC | O00712 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NFIB expression | ||||||||
| ReMap ChIP-seq dataset list | NFIB datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 88.0 | 188.0 | 74.0 | 150.0 |
| 02 | 14.0 | 289.0 | 75.0 | 122.0 |
| 03 | 0.0 | 282.0 | 1.0 | 217.0 |
| 04 | 1.0 | 0.0 | 4.0 | 495.0 |
| 05 | 0.0 | 0.0 | 500.0 | 0.0 |
| 06 | 1.0 | 0.0 | 497.0 | 2.0 |
| 07 | 15.0 | 482.0 | 2.0 | 1.0 |
| 08 | 329.0 | 17.0 | 1.0 | 153.0 |
| 09 | 37.0 | 147.0 | 248.0 | 68.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.346 | 0.404 | -0.516 | 0.18 |
| 02 | -2.096 | 0.831 | -0.503 | -0.024 |
| 03 | -4.4 | 0.807 | -3.903 | 0.546 |
| 04 | -3.903 | -4.4 | -3.126 | 1.367 |
| 05 | -4.4 | -4.4 | 1.377 | -4.4 |
| 06 | -3.903 | -4.4 | 1.371 | -3.573 |
| 07 | -2.034 | 1.34 | -3.573 | -3.903 |
| 08 | 0.96 | -1.92 | -3.903 | 0.2 |
| 09 | -1.189 | 0.16 | 0.679 | -0.599 |