We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNfib
ModelNFIB_MOUSE.H11DI.0.C
Model typeDinucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length13
Quality
C
Motif rank
0
ConsensusnSYTGGCWbhndn
Best auROC (human)0.624
Best auROC (mouse)0.845
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)2
Aligned words501
TF familyNuclear factor 1 {7.1.2}
TF subfamilyNF-1B {7.1.2.0.2}
MGIMGI:103188
EntrezGeneGeneID:18028
(SSTAR profile)
UniProt IDNFIB_MOUSE
UniProt ACP97863
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 9.90831
0.0005 12.593744999999998
0.0001 16.031455
GTEx tissue expression atlas Nfib expression
Motifs in JASPAR
PCM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
014.058.033.017.02.077.03.018.00.084.025.019.06.0101.035.018.0
020.05.00.07.00.0155.00.0165.00.061.01.034.00.022.00.050.0
030.00.00.00.00.00.00.0243.00.00.00.01.00.00.00.0256.0
040.00.00.00.00.00.00.00.00.00.00.00.00.00.0500.00.0
050.00.00.00.00.00.00.00.00.00.0499.01.00.00.00.00.0
060.00.00.00.00.00.00.00.017.0482.00.00.00.01.00.00.0
0713.00.00.04.0274.06.05.0198.00.00.00.00.00.00.00.00.0
0814.0100.0119.054.00.04.02.00.01.01.03.00.04.092.062.044.0
095.09.04.01.070.078.017.032.060.086.022.018.031.049.09.09.0
1023.040.066.037.063.065.026.068.018.06.019.09.014.010.028.08.0
1122.011.059.026.022.026.024.049.019.032.068.020.018.06.080.018.0
128.028.033.012.011.032.010.022.053.055.070.053.07.036.042.028.0
PWM
AAACAGATCACCCGCTGAGCGGGTTATCTGTT
01-1.9750.6130.054-0.599-2.5840.894-2.234-0.543-4.40.981-0.22-0.49-1.61.1650.112-0.543
02-4.4-1.77-4.4-1.454-4.41.592-4.41.654-4.40.663-3.1260.083-4.4-0.346-4.40.465
03-4.4-4.4-4.4-4.4-4.4-4.4-4.42.04-4.4-4.4-4.4-3.126-4.4-4.4-4.42.092
04-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.761-4.4
05-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.42.759-3.126-4.4-4.4-4.4-4.4
06-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4-0.5992.724-4.4-4.4-4.4-3.126-4.4-4.4
07-0.86-4.4-4.4-1.9752.16-1.6-1.771.836-4.4-4.4-4.4-4.4-4.4-4.4-4.4-4.4
08-0.7881.1551.3280.542-4.4-1.975-2.584-4.4-3.126-3.126-2.234-4.4-1.9751.0720.6790.339
09-1.77-1.215-1.975-3.1260.80.907-0.5990.0230.6461.004-0.346-0.543-0.0080.445-1.215-1.215
10-0.3020.2440.7410.1670.6950.726-0.1810.771-0.543-1.6-0.49-1.215-0.788-1.114-0.108-1.328
11-0.346-1.0220.63-0.181-0.346-0.181-0.260.445-0.490.0230.771-0.439-0.543-1.60.932-0.543
12-1.328-0.1080.054-0.938-1.0220.023-1.114-0.3460.5230.560.80.523-1.4540.140.293-0.108