Model info
| Transcription factor | Nfib | ||||||||
| Model | NFIB_MOUSE.H11MO.0.C | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 9 | ||||||||
| Quality | C | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | YYTGGCWbv | ||||||||
| Best auROC (human) | 0.596 | ||||||||
| Best auROC (mouse) | 0.832 | ||||||||
| Peak sets in benchmark (human) | 2 | ||||||||
| Peak sets in benchmark (mouse) | 2 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Nuclear factor 1 {7.1.2} | ||||||||
| TF subfamily | NF-1B {7.1.2.0.2} | ||||||||
| MGI | MGI:103188 | ||||||||
| EntrezGene | GeneID:18028 (SSTAR profile) | ||||||||
| UniProt ID | NFIB_MOUSE | ||||||||
| UniProt AC | P97863 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | Nfib expression | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 13.0 | 274.0 | 105.0 | 108.0 |
| 02 | 2.0 | 273.0 | 0.0 | 225.0 |
| 03 | 0.0 | 0.0 | 7.0 | 493.0 |
| 04 | 0.0 | 0.0 | 500.0 | 0.0 |
| 05 | 1.0 | 0.0 | 496.0 | 3.0 |
| 06 | 12.0 | 485.0 | 2.0 | 1.0 |
| 07 | 323.0 | 13.0 | 2.0 | 162.0 |
| 08 | 27.0 | 135.0 | 261.0 | 77.0 |
| 09 | 118.0 | 212.0 | 132.0 | 38.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -2.163 | 0.778 | -0.172 | -0.144 |
| 02 | -3.573 | 0.774 | -4.4 | 0.582 |
| 03 | -4.4 | -4.4 | -2.694 | 1.363 |
| 04 | -4.4 | -4.4 | 1.377 | -4.4 |
| 05 | -3.903 | -4.4 | 1.369 | -3.325 |
| 06 | -2.234 | 1.347 | -3.573 | -3.903 |
| 07 | 0.942 | -2.163 | -3.573 | 0.256 |
| 08 | -1.489 | 0.076 | 0.73 | -0.477 |
| 09 | -0.057 | 0.523 | 0.054 | -1.163 |