We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNfib
ModelNFIB_MOUSE.H11MO.0.C
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length9
Quality
C
Motif rank
0
ConsensusYYTGGCWbv
Best auROC (human)0.596
Best auROC (mouse)0.832
Peak sets in benchmark (human)2
Peak sets in benchmark (mouse)2
Aligned words500
TF familyNuclear factor 1 {7.1.2}
TF subfamilyNF-1B {7.1.2.0.2}
MGIMGI:103188
EntrezGeneGeneID:18028
(SSTAR profile)
UniProt IDNFIB_MOUSE
UniProt ACP97863
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 5.16145
0.0005 6.40421
0.0001 7.836835
GTEx tissue expression atlas Nfib expression
Motifs in JASPAR
PCM
ACGT
0113.0274.0105.0108.0
022.0273.00.0225.0
030.00.07.0493.0
040.00.0500.00.0
051.00.0496.03.0
0612.0485.02.01.0
07323.013.02.0162.0
0827.0135.0261.077.0
09118.0212.0132.038.0
PWM
ACGT
01-2.1630.778-0.172-0.144
02-3.5730.774-4.40.582
03-4.4-4.4-2.6941.363
04-4.4-4.41.377-4.4
05-3.903-4.41.369-3.325
06-2.2341.347-3.573-3.903
070.942-2.163-3.5730.256
08-1.4890.0760.73-0.477
09-0.0570.5230.054-1.163