Model info
| Transcription factor | NFIC (GeneCards) | ||||||||
| Model | NFIC_HUMAN.H11MO.0.A | ||||||||
| Model type | Mononucleotide PWM | ||||||||
| LOGO |  | ||||||||
| LOGO (reverse complement) |  | ||||||||
| Data source | ChIP-Seq | ||||||||
| Model release | HOCOMOCOv11 | ||||||||
| Model length | 17 | ||||||||
| Quality | A | ||||||||
| Motif rank | 0 | ||||||||
| Consensus | bYKGGMhbChdKCCMdv | ||||||||
| Best auROC (human) | 0.945 | ||||||||
| Best auROC (mouse) | 0.472 | ||||||||
| Peak sets in benchmark (human) | 18 | ||||||||
| Peak sets in benchmark (mouse) | 1 | ||||||||
| Aligned words | 500 | ||||||||
| TF family | Nuclear factor 1 {7.1.2} | ||||||||
| TF subfamily | NF-1C (NF-IC) {7.1.2.0.3} | ||||||||
| HGNC | HGNC:7786 | ||||||||
| EntrezGene | GeneID:4782 (SSTAR profile) | ||||||||
| UniProt ID | NFIC_HUMAN | ||||||||
| UniProt AC | P08651 (TFClass) | ||||||||
| Comment | |||||||||
| Downloads | pcm
pwm alignment threshold to P-value grid | ||||||||
| Standard thresholds |
| ||||||||
| GTEx tissue expression atlas | NFIC expression | ||||||||
| ReMap ChIP-seq dataset list | NFIC datasets | ||||||||
| Motifs in JASPAR |
PCM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 59.0 | 244.0 | 106.0 | 91.0 |
| 02 | 38.0 | 218.0 | 18.0 | 226.0 |
| 03 | 33.0 | 11.0 | 84.0 | 372.0 |
| 04 | 7.0 | 4.0 | 458.0 | 31.0 |
| 05 | 21.0 | 16.0 | 445.0 | 18.0 |
| 06 | 102.0 | 340.0 | 29.0 | 29.0 |
| 07 | 159.0 | 127.0 | 32.0 | 182.0 |
| 08 | 46.0 | 207.0 | 126.0 | 121.0 |
| 09 | 0.0 | 301.0 | 0.0 | 199.0 |
| 10 | 117.0 | 200.0 | 87.0 | 96.0 |
| 11 | 143.0 | 45.0 | 90.0 | 222.0 |
| 12 | 10.0 | 44.0 | 314.0 | 132.0 |
| 13 | 12.0 | 429.0 | 23.0 | 36.0 |
| 14 | 9.0 | 481.0 | 4.0 | 6.0 |
| 15 | 335.0 | 122.0 | 7.0 | 36.0 |
| 16 | 228.0 | 35.0 | 189.0 | 48.0 |
| 17 | 107.0 | 111.0 | 229.0 | 53.0 |
PWM
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.737 | 0.663 | -0.163 | -0.313 |
| 02 | -1.163 | 0.551 | -1.868 | 0.587 |
| 03 | -1.298 | -2.311 | -0.392 | 1.082 |
| 04 | -2.694 | -3.126 | 1.29 | -1.358 |
| 05 | -1.725 | -1.975 | 1.261 | -1.868 |
| 06 | -0.201 | 0.993 | -1.421 | -1.421 |
| 07 | 0.238 | 0.016 | -1.328 | 0.372 |
| 08 | -0.979 | 0.5 | 0.008 | -0.032 |
| 09 | -4.4 | 0.872 | -4.4 | 0.46 |
| 10 | -0.065 | 0.465 | -0.357 | -0.26 |
| 11 | 0.133 | -1.0 | -0.324 | 0.569 |
| 12 | -2.394 | -1.022 | 0.914 | 0.054 |
| 13 | -2.234 | 1.224 | -1.64 | -1.215 |
| 14 | -2.484 | 1.338 | -3.126 | -2.819 |
| 15 | 0.978 | -0.024 | -2.694 | -1.215 |
| 16 | 0.595 | -1.242 | 0.409 | -0.938 |
| 17 | -0.153 | -0.117 | 0.6 | -0.841 |