We, Russian scientists of the autosome team, are depressed by the dire events caused by Russian military actions in Ukraine.
We express our condolences to all affected people and sincerely hope for a prompt transition to peace.
Model info
Transcription factorNFIC
(GeneCards)
ModelNFIC_HUMAN.H11MO.0.A
Model typeMononucleotide PWM
LOGO
LOGO (reverse complement)
Data sourceChIP-Seq
Model releaseHOCOMOCOv11
Model length17
Quality
A
Motif rank
0
ConsensusbYKGGMhbChdKCCMdv
Best auROC (human)0.945
Best auROC (mouse)0.472
Peak sets in benchmark (human)18
Peak sets in benchmark (mouse)1
Aligned words500
TF familyNuclear factor 1 {7.1.2}
TF subfamilyNF-1C (NF-IC) {7.1.2.0.3}
HGNCHGNC:7786
EntrezGeneGeneID:4782
(SSTAR profile)
UniProt IDNFIC_HUMAN
UniProt ACP08651
(TFClass)
Comment
Downloadspcm
pwm
alignment
threshold to P-value grid
Standard thresholds
P-value
Threshold
0.001 4.651909999999999
0.0005 5.59901
0.0001 7.539860000000001
GTEx tissue expression atlas NFIC expression
ReMap ChIP-seq dataset list NFIC datasets
Motifs in JASPAR
PCM
ACGT
0159.0244.0106.091.0
0238.0218.018.0226.0
0333.011.084.0372.0
047.04.0458.031.0
0521.016.0445.018.0
06102.0340.029.029.0
07159.0127.032.0182.0
0846.0207.0126.0121.0
090.0301.00.0199.0
10117.0200.087.096.0
11143.045.090.0222.0
1210.044.0314.0132.0
1312.0429.023.036.0
149.0481.04.06.0
15335.0122.07.036.0
16228.035.0189.048.0
17107.0111.0229.053.0
PWM
ACGT
01-0.7370.663-0.163-0.313
02-1.1630.551-1.8680.587
03-1.298-2.311-0.3921.082
04-2.694-3.1261.29-1.358
05-1.725-1.9751.261-1.868
06-0.2010.993-1.421-1.421
070.2380.016-1.3280.372
08-0.9790.50.008-0.032
09-4.40.872-4.40.46
10-0.0650.465-0.357-0.26
110.133-1.0-0.3240.569
12-2.394-1.0220.9140.054
13-2.2341.224-1.64-1.215
14-2.4841.338-3.126-2.819
150.978-0.024-2.694-1.215
160.595-1.2420.409-0.938
17-0.153-0.1170.6-0.841